Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2490 and GFF2491 are separated by 92 nucleotides GFF2491 and GFF2492 are separated by 3 nucleotides GFF2492 and GFF2493 are separated by 54 nucleotides GFF2493 and GFF2494 overlap by 25 nucleotides
GFF2490 - Starvation sensing protein RspB, at 9,090 to 10,109
GFF2490
GFF2491 - Putative transport protein, at 10,202 to 11,140
GFF2491
GFF2492 - Putative transport protein, at 11,144 to 11,542
GFF2492
GFF2493 - FIG01047459: hypothetical protein, at 11,597 to 11,710
GFF2493
GFF2494 - D-mannonate oxidoreductase (EC 1.1.1.57), at 11,686 to 13,152
GFF2494
Position (kb) 10
11
12 Strain fitness (log2 ratio) -1
0
1 at 9.215 kb on + strand, within GFF2490 at 9.215 kb on + strand, within GFF2490 at 9.584 kb on + strand, within GFF2490 at 9.585 kb on - strand, within GFF2490 at 10.108 kb on - strand at 10.116 kb on + strand at 10.127 kb on - strand at 10.540 kb on + strand, within GFF2491 at 10.739 kb on - strand, within GFF2491 at 11.395 kb on - strand, within GFF2492 at 11.411 kb on + strand, within GFF2492 at 11.419 kb on + strand, within GFF2492 at 11.673 kb on + strand, within GFF2493 at 11.912 kb on - strand, within GFF2494 at 11.912 kb on - strand, within GFF2494
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 9,215 + GFF2490 0.12 +0.0 9,215 + GFF2490 0.12 +0.4 9,584 + GFF2490 0.48 -0.4 9,585 - GFF2490 0.49 -0.2 10,108 - -0.8 10,116 + +0.5 10,127 - -1.1 10,540 + GFF2491 0.36 -1.3 10,739 - GFF2491 0.57 +0.0 11,395 - GFF2492 0.63 -0.6 11,411 + GFF2492 0.67 -0.6 11,419 + GFF2492 0.69 -0.8 11,673 + GFF2493 0.67 +0.2 11,912 - GFF2494 0.15 +0.4 11,912 - GFF2494 0.15 -0.9
Or see this region's nucleotide sequence