Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2476 and GFF2477 are separated by 16 nucleotides GFF2477 and GFF2478 are separated by 428 nucleotides
GFF2476 - Signal peptidase I (EC 3.4.21.89), at 94,266 to 95,240
GFF2476
GFF2477 - Translation elongation factor LepA, at 95,257 to 97,056
GFF2477
GFF2478 - leucine-rich repeat protein, at 97,485 to 98,954
GFF2478
Position (kb)
95
96
97
98 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 94.274 kb on + strand at 95.803 kb on - strand, within GFF2477 at 95.813 kb on - strand, within GFF2477 at 95.817 kb on - strand, within GFF2477 at 95.836 kb on - strand, within GFF2477 at 95.836 kb on - strand, within GFF2477 at 95.909 kb on + strand, within GFF2477 at 95.910 kb on - strand, within GFF2477 at 95.910 kb on - strand, within GFF2477 at 95.910 kb on - strand, within GFF2477 at 95.914 kb on - strand, within GFF2477 at 95.943 kb on - strand, within GFF2477 at 96.170 kb on + strand, within GFF2477 at 96.171 kb on - strand, within GFF2477 at 96.171 kb on - strand, within GFF2477 at 96.988 kb on - strand at 97.132 kb on - strand at 97.156 kb on - strand at 97.158 kb on + strand at 97.158 kb on + strand at 97.158 kb on + strand at 97.159 kb on - strand at 97.159 kb on - strand at 97.159 kb on - strand at 97.159 kb on - strand at 97.185 kb on + strand at 97.204 kb on + strand at 97.204 kb on + strand at 97.205 kb on - strand at 97.222 kb on + strand at 97.231 kb on - strand at 97.231 kb on - strand at 97.247 kb on + strand at 97.247 kb on + strand at 97.248 kb on - strand at 97.401 kb on - strand at 97.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 94,274 + -1.7 95,803 - GFF2477 0.30 -1.0 95,813 - GFF2477 0.31 -0.7 95,817 - GFF2477 0.31 -0.3 95,836 - GFF2477 0.32 +2.4 95,836 - GFF2477 0.32 -0.8 95,909 + GFF2477 0.36 -1.1 95,910 - GFF2477 0.36 -0.8 95,910 - GFF2477 0.36 -0.1 95,910 - GFF2477 0.36 -1.4 95,914 - GFF2477 0.36 -1.0 95,943 - GFF2477 0.38 -0.8 96,170 + GFF2477 0.51 -1.8 96,171 - GFF2477 0.51 -2.7 96,171 - GFF2477 0.51 -0.6 96,988 - -2.4 97,132 - +1.9 97,156 - +1.5 97,158 + +0.6 97,158 + +1.3 97,158 + +2.2 97,159 - +0.4 97,159 - +1.1 97,159 - +0.2 97,159 - +0.7 97,185 + +2.3 97,204 + +2.4 97,204 + +1.6 97,205 - +2.4 97,222 + +2.1 97,231 - +1.6 97,231 - +1.9 97,247 + +0.9 97,247 + +1.0 97,248 - +1.8 97,401 - +1.8 97,526 + +1.6
Or see this region's nucleotide sequence