Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF241 and GFF242 are separated by 471 nucleotides GFF242 and GFF243 are separated by 48 nucleotides GFF243 and GFF244 are separated by 229 nucleotides GFF244 and GFF245 are separated by 150 nucleotides
GFF241 - ATP-dependent DNA helicase UvrD/PcrA, at 14,375 to 16,537
GFF241
GFF242 - Magnesium and cobalt transport protein CorA, at 17,009 to 17,959
GFF242
GFF243 - FIG01047791: hypothetical protein, at 18,008 to 18,388
GFF243
GFF244 - hypothetical protein, at 18,618 to 18,746
GFF244
GFF245 - Protein rarD, at 18,897 to 19,781
GFF245
Position (kb)
17
18 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 16.088 kb on - strand, within GFF241 at 16.215 kb on - strand, within GFF241 at 16.236 kb on - strand, within GFF241 at 16.429 kb on + strand at 16.668 kb on - strand at 16.759 kb on + strand at 16.782 kb on - strand at 16.812 kb on - strand at 16.989 kb on - strand at 17.088 kb on + strand at 17.089 kb on - strand at 17.278 kb on + strand, within GFF242 at 17.279 kb on - strand, within GFF242 at 17.404 kb on - strand, within GFF242 at 17.495 kb on - strand, within GFF242 at 17.835 kb on - strand, within GFF242 at 17.896 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.965 kb on + strand at 18.022 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 16,088 - GFF241 0.79 -2.1 16,215 - GFF241 0.85 +1.5 16,236 - GFF241 0.86 +1.1 16,429 + -0.1 16,668 - +0.2 16,759 + -0.6 16,782 - -0.0 16,812 - -1.3 16,989 - -1.1 17,088 + -1.8 17,089 - -1.9 17,278 + GFF242 0.28 -2.2 17,279 - GFF242 0.28 -3.3 17,404 - GFF242 0.42 +0.3 17,495 - GFF242 0.51 -0.6 17,835 - GFF242 0.87 -1.6 17,896 + -0.9 17,957 + +1.0 17,957 + +0.0 17,965 + -0.1 18,022 + -0.0
Or see this region's nucleotide sequence