Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF220 and GFF221 overlap by 4 nucleotides GFF221 and GFF222 are separated by 29 nucleotides GFF222 and GFF223 are separated by 256 nucleotides
GFF220 - Citrate lyase beta chain (EC 4.1.3.6), at 218,221 to 219,090
GFF220
GFF221 - Citrate lyase beta chain (EC 4.1.3.6), at 219,087 to 219,380
GFF221
GFF222 - [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22), at 219,410 to 220,441
GFF222
GFF223 - Na(+)Citrate OH(-) antiporter, at 220,698 to 222,038
GFF223
Position (kb) 219
220
221 Strain fitness (log2 ratio) -1
0
1 at 218.432 kb on - strand, within GFF220 at 218.439 kb on + strand, within GFF220 at 218.446 kb on - strand, within GFF220 at 218.497 kb on - strand, within GFF220 at 218.889 kb on + strand, within GFF220 at 218.918 kb on + strand, within GFF220 at 218.919 kb on - strand, within GFF220 at 218.948 kb on - strand, within GFF220 at 218.974 kb on + strand, within GFF220 at 218.975 kb on - strand, within GFF220 at 219.072 kb on + strand at 219.073 kb on - strand at 219.073 kb on - strand at 219.385 kb on + strand at 219.386 kb on - strand at 219.482 kb on + strand at 219.497 kb on - strand at 219.497 kb on - strand at 219.508 kb on - strand at 219.634 kb on - strand, within GFF222 at 219.683 kb on - strand, within GFF222 at 219.802 kb on + strand, within GFF222 at 219.804 kb on + strand, within GFF222 at 219.805 kb on - strand, within GFF222 at 219.805 kb on - strand, within GFF222 at 220.198 kb on + strand, within GFF222 at 220.199 kb on - strand, within GFF222 at 220.199 kb on - strand, within GFF222 at 220.317 kb on + strand, within GFF222 at 220.400 kb on + strand at 220.401 kb on - strand at 220.811 kb on - strand at 220.869 kb on - strand, within GFF223 at 221.026 kb on + strand, within GFF223 at 221.057 kb on + strand, within GFF223 at 221.058 kb on - strand, within GFF223 at 221.058 kb on - strand, within GFF223 at 221.099 kb on + strand, within GFF223 at 221.127 kb on + strand, within GFF223 at 221.127 kb on + strand, within GFF223 at 221.339 kb on + strand, within GFF223 at 221.340 kb on - strand, within GFF223 at 221.395 kb on + strand, within GFF223
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 218,432 - GFF220 0.24 -1.1 218,439 + GFF220 0.25 +0.2 218,446 - GFF220 0.26 -0.8 218,497 - GFF220 0.32 -0.1 218,889 + GFF220 0.77 -0.9 218,918 + GFF220 0.80 +0.5 218,919 - GFF220 0.80 +0.6 218,948 - GFF220 0.84 +0.6 218,974 + GFF220 0.87 -0.0 218,975 - GFF220 0.87 -0.9 219,072 + +0.6 219,073 - +0.3 219,073 - -0.0 219,385 + -0.2 219,386 - -1.1 219,482 + +0.8 219,497 - -0.0 219,497 - +0.5 219,508 - -0.3 219,634 - GFF222 0.22 +0.2 219,683 - GFF222 0.26 +1.3 219,802 + GFF222 0.38 +0.1 219,804 + GFF222 0.38 +1.1 219,805 - GFF222 0.38 +0.4 219,805 - GFF222 0.38 +0.1 220,198 + GFF222 0.76 +0.2 220,199 - GFF222 0.76 -0.0 220,199 - GFF222 0.76 -0.1 220,317 + GFF222 0.88 +0.8 220,400 + -0.3 220,401 - -1.1 220,811 - -0.8 220,869 - GFF223 0.13 +0.4 221,026 + GFF223 0.24 -1.5 221,057 + GFF223 0.27 +0.2 221,058 - GFF223 0.27 -0.7 221,058 - GFF223 0.27 +0.4 221,099 + GFF223 0.30 -0.4 221,127 + GFF223 0.32 +0.8 221,127 + GFF223 0.32 -1.6 221,339 + GFF223 0.48 -0.0 221,340 - GFF223 0.48 -0.5 221,395 + GFF223 0.52 +0.4
Or see this region's nucleotide sequence