Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2190 and GFF2191 are separated by 387 nucleotides GFF2191 and GFF2192 are separated by 203 nucleotides GFF2192 and GFF2193 are separated by 124 nucleotides
GFF2190 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 39,808 to 41,769
GFF2190
GFF2191 - Beta-lactamase class C and other penicillin binding proteins, at 42,157 to 43,455
GFF2191
GFF2192 - GDP-mannose pyrophosphatase YffH, at 43,659 to 44,234
GFF2192
GFF2193 - FIG01200701: possible membrane protein, at 44,359 to 45,402
GFF2193
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.258 kb on + strand, within GFF2190 at 41.302 kb on + strand, within GFF2190 at 41.382 kb on + strand, within GFF2190 at 41.412 kb on + strand, within GFF2190 at 41.492 kb on + strand, within GFF2190 at 41.565 kb on + strand, within GFF2190 at 41.565 kb on + strand, within GFF2190 at 41.602 kb on - strand at 41.614 kb on - strand at 41.768 kb on - strand at 41.768 kb on - strand at 42.025 kb on - strand at 42.144 kb on - strand at 42.173 kb on + strand at 42.173 kb on + strand at 42.197 kb on + strand at 42.215 kb on - strand at 42.298 kb on - strand, within GFF2191 at 42.350 kb on + strand, within GFF2191 at 42.627 kb on + strand, within GFF2191 at 42.627 kb on + strand, within GFF2191 at 42.628 kb on - strand, within GFF2191 at 42.739 kb on - strand, within GFF2191 at 42.853 kb on - strand, within GFF2191 at 43.050 kb on + strand, within GFF2191 at 43.065 kb on - strand, within GFF2191 at 43.163 kb on + strand, within GFF2191 at 43.164 kb on - strand, within GFF2191 at 43.426 kb on + strand at 43.531 kb on - strand at 43.531 kb on - strand at 43.556 kb on - strand at 43.564 kb on - strand at 43.630 kb on + strand at 43.727 kb on + strand, within GFF2192 at 43.816 kb on - strand, within GFF2192 at 43.898 kb on - strand, within GFF2192 at 43.946 kb on + strand, within GFF2192 at 44.002 kb on + strand, within GFF2192 at 44.003 kb on - strand, within GFF2192 at 44.013 kb on + strand, within GFF2192 at 44.013 kb on + strand, within GFF2192 at 44.014 kb on - strand, within GFF2192 at 44.015 kb on + strand, within GFF2192 at 44.015 kb on + strand, within GFF2192 at 44.016 kb on - strand, within GFF2192 at 44.016 kb on - strand, within GFF2192 at 44.065 kb on - strand, within GFF2192 at 44.072 kb on + strand, within GFF2192 at 44.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 41,258 + GFF2190 0.74 -0.1 41,302 + GFF2190 0.76 -0.5 41,382 + GFF2190 0.80 -0.1 41,412 + GFF2190 0.82 +0.7 41,492 + GFF2190 0.86 +0.3 41,565 + GFF2190 0.90 +0.1 41,565 + GFF2190 0.90 +0.9 41,602 - -0.4 41,614 - -0.1 41,768 - +0.2 41,768 - +0.7 42,025 - +0.4 42,144 - -0.3 42,173 + +0.2 42,173 + -0.8 42,197 + +0.1 42,215 - +0.3 42,298 - GFF2191 0.11 -1.9 42,350 + GFF2191 0.15 +0.9 42,627 + GFF2191 0.36 -0.5 42,627 + GFF2191 0.36 -0.6 42,628 - GFF2191 0.36 +0.6 42,739 - GFF2191 0.45 -0.6 42,853 - GFF2191 0.54 +0.1 43,050 + GFF2191 0.69 +0.1 43,065 - GFF2191 0.70 +0.2 43,163 + GFF2191 0.77 -3.7 43,164 - GFF2191 0.78 -0.0 43,426 + +2.0 43,531 - -0.6 43,531 - +0.3 43,556 - +0.1 43,564 - -1.7 43,630 + +0.1 43,727 + GFF2192 0.12 +0.4 43,816 - GFF2192 0.27 -0.4 43,898 - GFF2192 0.41 -0.2 43,946 + GFF2192 0.50 -0.4 44,002 + GFF2192 0.60 -0.0 44,003 - GFF2192 0.60 +0.7 44,013 + GFF2192 0.61 +0.1 44,013 + GFF2192 0.61 -0.1 44,014 - GFF2192 0.62 +0.2 44,015 + GFF2192 0.62 -1.3 44,015 + GFF2192 0.62 +0.7 44,016 - GFF2192 0.62 -0.5 44,016 - GFF2192 0.62 -0.5 44,065 - GFF2192 0.70 -0.0 44,072 + GFF2192 0.72 +0.4 44,195 - +0.1
Or see this region's nucleotide sequence