Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1650 and GFF1651 are separated by 40 nucleotides GFF1651 and GFF1652 overlap by 4 nucleotides GFF1652 and GFF1653 are separated by 235 nucleotides
GFF1650 - FIG01046209: inner membrane protein, at 35,063 to 35,458
GFF1650
GFF1651 - tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase, at 35,499 to 36,242
GFF1651
GFF1652 - tRNA (5-methoxyuridine) 34 synthase, at 36,239 to 37,210
GFF1652
GFF1653 - Cytoplasmic copper homeostasis protein CutC, at 37,446 to 38,192
GFF1653
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 35.288 kb on - strand, within GFF1650 at 35.424 kb on - strand at 35.424 kb on - strand at 35.424 kb on - strand at 35.426 kb on - strand at 35.498 kb on + strand at 35.498 kb on + strand at 35.499 kb on - strand at 35.614 kb on - strand, within GFF1651 at 35.644 kb on + strand, within GFF1651 at 35.679 kb on + strand, within GFF1651 at 35.727 kb on - strand, within GFF1651 at 35.765 kb on + strand, within GFF1651 at 35.811 kb on + strand, within GFF1651 at 35.822 kb on + strand, within GFF1651 at 36.066 kb on + strand, within GFF1651 at 36.479 kb on - strand, within GFF1652 at 36.539 kb on - strand, within GFF1652 at 36.641 kb on + strand, within GFF1652 at 36.946 kb on - strand, within GFF1652 at 36.992 kb on - strand, within GFF1652 at 37.051 kb on + strand, within GFF1652 at 37.231 kb on - strand at 37.234 kb on + strand at 37.234 kb on + strand at 37.234 kb on + strand at 37.234 kb on + strand at 37.255 kb on + strand at 37.302 kb on + strand at 37.302 kb on + strand at 37.310 kb on + strand at 37.418 kb on - strand at 37.503 kb on + strand at 37.509 kb on - strand at 37.509 kb on - strand at 37.519 kb on + strand at 37.710 kb on - strand, within GFF1653 at 37.886 kb on + strand, within GFF1653 at 38.031 kb on + strand, within GFF1653 at 38.042 kb on + strand, within GFF1653 at 38.046 kb on - strand, within GFF1653 at 38.065 kb on - strand, within GFF1653 at 38.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 35,288 - GFF1650 0.57 -0.6 35,424 - -0.9 35,424 - +0.4 35,424 - +0.1 35,426 - -1.4 35,498 + +0.0 35,498 + -0.3 35,499 - +0.8 35,614 - GFF1651 0.15 -0.3 35,644 + GFF1651 0.19 -0.4 35,679 + GFF1651 0.24 -0.3 35,727 - GFF1651 0.31 -1.0 35,765 + GFF1651 0.36 +1.0 35,811 + GFF1651 0.42 -0.1 35,822 + GFF1651 0.43 -0.4 36,066 + GFF1651 0.76 -0.1 36,479 - GFF1652 0.25 -1.0 36,539 - GFF1652 0.31 -1.7 36,641 + GFF1652 0.41 -0.1 36,946 - GFF1652 0.73 -0.4 36,992 - GFF1652 0.77 +0.1 37,051 + GFF1652 0.84 -0.6 37,231 - -0.1 37,234 + +0.5 37,234 + -1.2 37,234 + -0.2 37,234 + +1.5 37,255 + -0.0 37,302 + +0.1 37,302 + +0.0 37,310 + -2.7 37,418 - +0.9 37,503 + +0.2 37,509 - -0.3 37,509 - -0.4 37,519 + -0.3 37,710 - GFF1653 0.35 -1.5 37,886 + GFF1653 0.59 +0.2 38,031 + GFF1653 0.78 +0.1 38,042 + GFF1653 0.80 -0.1 38,046 - GFF1653 0.80 +0.3 38,065 - GFF1653 0.83 -0.2 38,185 - -1.0
Or see this region's nucleotide sequence