Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_590

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_588 and PfGW456L13_589 overlap by 4 nucleotidesPfGW456L13_589 and PfGW456L13_590 are separated by 14 nucleotidesPfGW456L13_590 and PfGW456L13_591 are separated by 199 nucleotidesPfGW456L13_591 and PfGW456L13_592 are separated by 45 nucleotides PfGW456L13_588 - GGDEF domain protein, at 681,205 to 683,163 _588 PfGW456L13_589 - Endonuclease/exonuclease/phosphatase family protein, at 683,160 to 684,038 _589 PfGW456L13_590 - Periplasmic thiol:disulfide interchange protein DsbA, at 684,053 to 684,694 _590 PfGW456L13_591 - Cytochrome c4, at 684,894 to 685,523 _591 PfGW456L13_592 - Cytochrome c5, at 685,569 to 685,685 _592 Position (kb) 684 685Strain fitness (log2 ratio) -2 -1 0 1 2at 683.129 kb on + strandat 683.129 kb on + strandat 683.130 kb on - strandat 683.130 kb on - strandat 683.130 kb on - strandat 683.130 kb on - strandat 683.130 kb on - strandat 683.130 kb on - strandat 683.319 kb on - strand, within PfGW456L13_589at 683.462 kb on - strand, within PfGW456L13_589at 683.462 kb on - strand, within PfGW456L13_589at 683.462 kb on - strand, within PfGW456L13_589at 683.462 kb on - strand, within PfGW456L13_589at 683.485 kb on + strand, within PfGW456L13_589at 683.486 kb on - strand, within PfGW456L13_589at 683.486 kb on - strand, within PfGW456L13_589at 683.486 kb on - strand, within PfGW456L13_589at 683.681 kb on + strand, within PfGW456L13_589at 683.681 kb on + strand, within PfGW456L13_589at 683.681 kb on + strand, within PfGW456L13_589at 683.681 kb on + strand, within PfGW456L13_589at 683.698 kb on + strand, within PfGW456L13_589at 683.699 kb on - strand, within PfGW456L13_589at 683.749 kb on + strand, within PfGW456L13_589at 683.749 kb on + strand, within PfGW456L13_589at 683.808 kb on + strand, within PfGW456L13_589at 683.884 kb on + strand, within PfGW456L13_589at 683.885 kb on - strand, within PfGW456L13_589at 683.885 kb on - strand, within PfGW456L13_589at 684.024 kb on - strandat 684.054 kb on + strandat 684.054 kb on + strandat 684.054 kb on + strandat 684.055 kb on - strandat 684.055 kb on - strandat 684.282 kb on - strand, within PfGW456L13_590at 684.699 kb on + strandat 684.700 kb on - strandat 684.700 kb on - strandat 684.767 kb on + strandat 684.767 kb on + strandat 684.767 kb on + strandat 684.767 kb on + strandat 684.768 kb on - strandat 684.768 kb on - strandat 684.768 kb on - strandat 684.768 kb on - strandat 684.816 kb on + strandat 684.816 kb on + strandat 684.816 kb on + strandat 684.816 kb on + strandat 684.816 kb on + strandat 684.817 kb on - strandat 684.817 kb on - strandat 684.817 kb on - strandat 684.817 kb on - strandat 684.818 kb on + strandat 684.819 kb on - strandat 684.819 kb on - strandat 684.819 kb on - strandat 684.819 kb on - strandat 684.835 kb on + strandat 684.835 kb on + strandat 684.895 kb on + strandat 684.896 kb on - strandat 684.913 kb on + strandat 684.914 kb on - strandat 685.039 kb on + strand, within PfGW456L13_591at 685.040 kb on - strand, within PfGW456L13_591at 685.040 kb on - strand, within PfGW456L13_591at 685.040 kb on - strand, within PfGW456L13_591at 685.222 kb on + strand, within PfGW456L13_591at 685.331 kb on - strand, within PfGW456L13_591at 685.449 kb on + strand, within PfGW456L13_591at 685.449 kb on + strand, within PfGW456L13_591at 685.449 kb on + strand, within PfGW456L13_591at 685.450 kb on - strand, within PfGW456L13_591at 685.450 kb on - strand, within PfGW456L13_591at 685.529 kb on - strandat 685.537 kb on + strandat 685.537 kb on + strandat 685.538 kb on - strandat 685.538 kb on - strandat 685.538 kb on - strandat 685.544 kb on - strandat 685.550 kb on + strandat 685.557 kb on + strandat 685.557 kb on + strandat 685.558 kb on - strandat 685.570 kb on + strandat 685.685 kb on + strandat 685.685 kb on + strandat 685.686 kb on - strandat 685.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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683,129 + +0.3
683,129 + -0.2
683,130 - -0.7
683,130 - -0.6
683,130 - +1.4
683,130 - -0.1
683,130 - -0.3
683,130 - -0.3
683,319 - PfGW456L13_589 0.18 -0.1
683,462 - PfGW456L13_589 0.34 -0.1
683,462 - PfGW456L13_589 0.34 +0.4
683,462 - PfGW456L13_589 0.34 +0.9
683,462 - PfGW456L13_589 0.34 -0.0
683,485 + PfGW456L13_589 0.37 -0.0
683,486 - PfGW456L13_589 0.37 +0.1
683,486 - PfGW456L13_589 0.37 -0.4
683,486 - PfGW456L13_589 0.37 +0.6
683,681 + PfGW456L13_589 0.59 -0.1
683,681 + PfGW456L13_589 0.59 -0.1
683,681 + PfGW456L13_589 0.59 -0.3
683,681 + PfGW456L13_589 0.59 -0.4
683,698 + PfGW456L13_589 0.61 -0.1
683,699 - PfGW456L13_589 0.61 -0.1
683,749 + PfGW456L13_589 0.67 -0.1
683,749 + PfGW456L13_589 0.67 -0.9
683,808 + PfGW456L13_589 0.74 +0.6
683,884 + PfGW456L13_589 0.82 +0.1
683,885 - PfGW456L13_589 0.82 +0.8
683,885 - PfGW456L13_589 0.82 -0.1
684,024 - -0.5
684,054 + -0.4
684,054 + -0.9
684,054 + -0.4
684,055 - -0.1
684,055 - +0.1
684,282 - PfGW456L13_590 0.36 -1.0
684,699 + +0.7
684,700 - -0.1
684,700 - -0.1
684,767 + +0.3
684,767 + -0.5
684,767 + +0.4
684,767 + -0.1
684,768 - +0.4
684,768 - +0.2
684,768 - +0.2
684,768 - -0.2
684,816 + -0.2
684,816 + -0.5
684,816 + +0.1
684,816 + +0.3
684,816 + -0.1
684,817 - +0.2
684,817 - +0.1
684,817 - +0.7
684,817 - -0.2
684,818 + -0.9
684,819 - +0.0
684,819 - -0.0
684,819 - -0.7
684,819 - -0.1
684,835 + +0.7
684,835 + -0.4
684,895 + -1.0
684,896 - +0.8
684,913 + -1.1
684,914 - -2.1
685,039 + PfGW456L13_591 0.23 +0.6
685,040 - PfGW456L13_591 0.23 +0.3
685,040 - PfGW456L13_591 0.23 -1.2
685,040 - PfGW456L13_591 0.23 -1.6
685,222 + PfGW456L13_591 0.52 +1.4
685,331 - PfGW456L13_591 0.69 +2.0
685,449 + PfGW456L13_591 0.88 +0.1
685,449 + PfGW456L13_591 0.88 -0.3
685,449 + PfGW456L13_591 0.88 -1.6
685,450 - PfGW456L13_591 0.88 +0.4
685,450 - PfGW456L13_591 0.88 +1.1
685,529 - -0.8
685,537 + -2.3
685,537 + -1.8
685,538 - +0.2
685,538 - -0.9
685,538 - +0.7
685,544 - -0.6
685,550 + -1.9
685,557 + +1.4
685,557 + +0.4
685,558 - -0.5
685,570 + +0.8
685,685 + +0.4
685,685 + -0.5
685,686 - -0.2
685,686 - -0.5

Or see this region's nucleotide sequence