Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_434

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_432 and PfGW456L13_433 overlap by 4 nucleotidesPfGW456L13_433 and PfGW456L13_434 are separated by 145 nucleotidesPfGW456L13_434 and PfGW456L13_435 are separated by 146 nucleotides PfGW456L13_432 - Taurine transport ATP-binding protein TauB, at 497,988 to 498,782 _432 PfGW456L13_433 - Taurine transport system permease protein TauC, at 498,779 to 499,612 _433 PfGW456L13_434 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 499,758 to 500,600 _434 PfGW456L13_435 - Oxidoreductase, aldo/keto reductase family, at 500,747 to 501,784 _435 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1at 498.789 kb on - strandat 498.828 kb on + strandat 498.829 kb on - strandat 498.829 kb on - strandat 498.829 kb on - strandat 498.897 kb on + strand, within PfGW456L13_433at 498.979 kb on - strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.997 kb on + strand, within PfGW456L13_433at 498.997 kb on + strand, within PfGW456L13_433at 499.148 kb on + strand, within PfGW456L13_433at 499.173 kb on - strand, within PfGW456L13_433at 499.173 kb on - strand, within PfGW456L13_433at 499.232 kb on + strand, within PfGW456L13_433at 499.232 kb on + strand, within PfGW456L13_433at 499.232 kb on + strand, within PfGW456L13_433at 499.512 kb on + strand, within PfGW456L13_433at 499.513 kb on - strand, within PfGW456L13_433at 499.513 kb on - strand, within PfGW456L13_433at 499.619 kb on - strandat 499.625 kb on + strandat 499.626 kb on - strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.725 kb on + strandat 499.783 kb on + strandat 499.784 kb on - strandat 499.784 kb on - strandat 499.972 kb on - strand, within PfGW456L13_434at 500.157 kb on + strand, within PfGW456L13_434at 500.158 kb on - strand, within PfGW456L13_434at 500.159 kb on + strand, within PfGW456L13_434at 500.160 kb on - strand, within PfGW456L13_434at 500.521 kb on - strandat 500.584 kb on + strandat 500.584 kb on + strandat 500.584 kb on + strandat 500.584 kb on + strandat 500.584 kb on + strandat 500.584 kb on + strandat 500.584 kb on + strandat 500.584 kb on + strandat 500.585 kb on - strandat 500.585 kb on - strandat 500.585 kb on - strandat 500.585 kb on - strandat 500.585 kb on - strandat 500.615 kb on + strandat 500.616 kb on - strandat 500.685 kb on + strandat 500.748 kb on + strandat 500.748 kb on + strandat 500.749 kb on - strandat 500.749 kb on - strandat 500.749 kb on - strandat 500.830 kb on + strandat 500.831 kb on - strandat 501.084 kb on + strand, within PfGW456L13_435at 501.085 kb on - strand, within PfGW456L13_435at 501.085 kb on - strand, within PfGW456L13_435at 501.085 kb on - strand, within PfGW456L13_435at 501.195 kb on + strand, within PfGW456L13_435at 501.195 kb on + strand, within PfGW456L13_435at 501.196 kb on - strand, within PfGW456L13_435at 501.273 kb on + strand, within PfGW456L13_435at 501.274 kb on - strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.291 kb on + strand, within PfGW456L13_435at 501.292 kb on - strand, within PfGW456L13_435at 501.292 kb on - strand, within PfGW456L13_435at 501.292 kb on - strand, within PfGW456L13_435at 501.292 kb on - strand, within PfGW456L13_435at 501.376 kb on - strand, within PfGW456L13_435at 501.390 kb on + strand, within PfGW456L13_435at 501.390 kb on + strand, within PfGW456L13_435at 501.391 kb on - strand, within PfGW456L13_435at 501.391 kb on - strand, within PfGW456L13_435at 501.438 kb on + strand, within PfGW456L13_435at 501.438 kb on + strand, within PfGW456L13_435at 501.438 kb on + strand, within PfGW456L13_435at 501.439 kb on - strand, within PfGW456L13_435at 501.439 kb on - strand, within PfGW456L13_435at 501.439 kb on - strand, within PfGW456L13_435at 501.439 kb on - strand, within PfGW456L13_435at 501.465 kb on + strand, within PfGW456L13_435at 501.545 kb on + strand, within PfGW456L13_435at 501.546 kb on - strand, within PfGW456L13_435at 501.546 kb on - strand, within PfGW456L13_435at 501.588 kb on + strand, within PfGW456L13_435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
498,789 - +0.4
498,828 + +0.4
498,829 - -0.2
498,829 - +0.4
498,829 - -0.3
498,897 + PfGW456L13_433 0.14 -0.2
498,979 - PfGW456L13_433 0.24 +0.0
498,995 + PfGW456L13_433 0.26 -0.1
498,995 + PfGW456L13_433 0.26 -0.0
498,995 + PfGW456L13_433 0.26 +0.1
498,995 + PfGW456L13_433 0.26 -0.5
498,995 + PfGW456L13_433 0.26 +0.0
498,997 + PfGW456L13_433 0.26 -0.9
498,997 + PfGW456L13_433 0.26 +0.2
499,148 + PfGW456L13_433 0.44 -0.0
499,173 - PfGW456L13_433 0.47 -0.5
499,173 - PfGW456L13_433 0.47 -1.1
499,232 + PfGW456L13_433 0.54 -1.3
499,232 + PfGW456L13_433 0.54 +0.1
499,232 + PfGW456L13_433 0.54 +0.3
499,512 + PfGW456L13_433 0.88 +0.1
499,513 - PfGW456L13_433 0.88 +0.2
499,513 - PfGW456L13_433 0.88 -0.4
499,619 - +0.2
499,625 + +0.1
499,626 - -0.6
499,693 + -0.6
499,693 + +0.4
499,693 + -0.0
499,693 + -0.4
499,693 + -0.0
499,693 + -0.3
499,694 - -0.2
499,694 - -0.4
499,694 - -0.0
499,694 - -0.6
499,694 - -0.6
499,694 - -0.8
499,694 - -0.4
499,694 - -0.4
499,694 - +0.0
499,725 + +0.1
499,783 + +0.1
499,784 - -0.4
499,784 - -0.4
499,972 - PfGW456L13_434 0.25 -1.7
500,157 + PfGW456L13_434 0.47 -0.9
500,158 - PfGW456L13_434 0.47 +0.3
500,159 + PfGW456L13_434 0.48 -0.4
500,160 - PfGW456L13_434 0.48 -0.7
500,521 - +0.0
500,584 + -0.2
500,584 + -1.2
500,584 + -0.5
500,584 + -0.9
500,584 + -0.1
500,584 + -1.0
500,584 + -0.1
500,584 + +0.2
500,585 - +0.1
500,585 - +0.2
500,585 - +0.3
500,585 - -0.0
500,585 - -0.7
500,615 + -0.1
500,616 - -0.5
500,685 + +0.3
500,748 + +0.0
500,748 + +0.0
500,749 - +0.1
500,749 - +0.1
500,749 - -0.1
500,830 + -0.2
500,831 - -0.8
501,084 + PfGW456L13_435 0.32 -0.1
501,085 - PfGW456L13_435 0.33 +0.1
501,085 - PfGW456L13_435 0.33 -0.2
501,085 - PfGW456L13_435 0.33 -0.1
501,195 + PfGW456L13_435 0.43 -0.6
501,195 + PfGW456L13_435 0.43 -0.5
501,196 - PfGW456L13_435 0.43 -0.3
501,273 + PfGW456L13_435 0.51 +0.1
501,274 - PfGW456L13_435 0.51 -0.6
501,291 + PfGW456L13_435 0.52 +0.2
501,291 + PfGW456L13_435 0.52 +0.5
501,291 + PfGW456L13_435 0.52 -0.8
501,291 + PfGW456L13_435 0.52 +0.5
501,291 + PfGW456L13_435 0.52 +0.1
501,291 + PfGW456L13_435 0.52 -0.1
501,291 + PfGW456L13_435 0.52 -0.6
501,291 + PfGW456L13_435 0.52 -0.6
501,292 - PfGW456L13_435 0.53 +0.0
501,292 - PfGW456L13_435 0.53 -0.1
501,292 - PfGW456L13_435 0.53 -0.2
501,292 - PfGW456L13_435 0.53 -0.3
501,376 - PfGW456L13_435 0.61 -0.1
501,390 + PfGW456L13_435 0.62 -0.0
501,390 + PfGW456L13_435 0.62 -0.1
501,391 - PfGW456L13_435 0.62 -0.1
501,391 - PfGW456L13_435 0.62 -1.4
501,438 + PfGW456L13_435 0.67 +0.4
501,438 + PfGW456L13_435 0.67 -0.0
501,438 + PfGW456L13_435 0.67 +0.3
501,439 - PfGW456L13_435 0.67 +0.2
501,439 - PfGW456L13_435 0.67 +0.3
501,439 - PfGW456L13_435 0.67 -1.3
501,439 - PfGW456L13_435 0.67 -2.1
501,465 + PfGW456L13_435 0.69 +0.2
501,545 + PfGW456L13_435 0.77 +0.1
501,546 - PfGW456L13_435 0.77 -0.3
501,546 - PfGW456L13_435 0.77 +0.2
501,588 + PfGW456L13_435 0.81 -0.6

Or see this region's nucleotide sequence