Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6130 and Atu6131 are separated by 525 nucleotides Atu6131 and Atu6132 are separated by 158 nucleotides
Atu6130: Atu6130 - conserved hypothetical protein, at 149,016 to 149,645
Atu6130
Atu6131: Atu6131 - TraR Antiactivator, at 150,171 to 150,479
Atu6131
Atu6132: Atu6132 - methyl-accepting chemotaxis protein, at 150,638 to 152,377
Atu6132
Position (kb) 150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 149.175 kb on - strand, within Atu6130 at 149.183 kb on + strand, within Atu6130 at 149.235 kb on - strand, within Atu6130 at 149.237 kb on + strand, within Atu6130 at 149.273 kb on + strand, within Atu6130 at 149.278 kb on + strand, within Atu6130 at 149.443 kb on + strand, within Atu6130 at 149.453 kb on + strand, within Atu6130 at 149.453 kb on + strand, within Atu6130 at 149.525 kb on + strand, within Atu6130 at 149.555 kb on + strand, within Atu6130 at 149.563 kb on - strand, within Atu6130 at 149.589 kb on - strand at 149.634 kb on + strand at 149.636 kb on + strand at 149.642 kb on - strand at 149.745 kb on - strand at 149.781 kb on + strand at 149.789 kb on - strand at 149.789 kb on - strand at 149.823 kb on + strand at 149.831 kb on - strand at 149.837 kb on - strand at 149.931 kb on + strand at 149.991 kb on + strand at 149.991 kb on + strand at 150.012 kb on + strand at 150.032 kb on + strand at 150.076 kb on - strand at 150.234 kb on - strand, within Atu6131 at 150.348 kb on - strand, within Atu6131 at 150.367 kb on - strand, within Atu6131 at 150.380 kb on + strand, within Atu6131 at 150.388 kb on - strand, within Atu6131 at 150.388 kb on - strand, within Atu6131 at 150.405 kb on - strand, within Atu6131 at 150.535 kb on - strand at 150.535 kb on - strand at 150.540 kb on - strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.559 kb on - strand at 150.559 kb on - strand at 150.599 kb on + strand at 150.599 kb on + strand at 150.635 kb on + strand at 150.635 kb on + strand at 150.643 kb on - strand at 150.645 kb on + strand at 150.645 kb on + strand at 150.650 kb on + strand at 150.652 kb on + strand at 150.653 kb on - strand at 150.655 kb on + strand at 150.658 kb on - strand at 150.658 kb on - strand at 150.663 kb on - strand at 150.665 kb on + strand at 150.673 kb on - strand at 150.739 kb on + strand at 150.792 kb on + strand at 150.860 kb on + strand, within Atu6132 at 150.860 kb on + strand, within Atu6132 at 150.870 kb on + strand, within Atu6132 at 150.875 kb on - strand, within Atu6132 at 150.888 kb on + strand, within Atu6132 at 150.968 kb on - strand, within Atu6132 at 150.975 kb on + strand, within Atu6132 at 150.978 kb on - strand, within Atu6132 at 150.994 kb on + strand, within Atu6132 at 151.002 kb on - strand, within Atu6132 at 151.004 kb on + strand, within Atu6132 at 151.005 kb on - strand, within Atu6132 at 151.012 kb on - strand, within Atu6132 at 151.063 kb on - strand, within Atu6132 at 151.079 kb on + strand, within Atu6132 at 151.085 kb on + strand, within Atu6132 at 151.118 kb on - strand, within Atu6132 at 151.211 kb on + strand, within Atu6132 at 151.245 kb on - strand, within Atu6132 at 151.279 kb on + strand, within Atu6132 at 151.315 kb on - strand, within Atu6132 at 151.329 kb on - strand, within Atu6132 at 151.390 kb on - strand, within Atu6132 at 151.390 kb on - strand, within Atu6132
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 149,175 - Atu6130 0.25 -0.3 149,183 + Atu6130 0.27 -1.5 149,235 - Atu6130 0.35 -0.5 149,237 + Atu6130 0.35 -0.4 149,273 + Atu6130 0.41 -0.3 149,278 + Atu6130 0.42 -1.0 149,443 + Atu6130 0.68 +0.7 149,453 + Atu6130 0.69 +0.2 149,453 + Atu6130 0.69 -2.2 149,525 + Atu6130 0.81 +0.7 149,555 + Atu6130 0.86 -1.2 149,563 - Atu6130 0.87 +0.8 149,589 - +0.1 149,634 + +0.1 149,636 + -0.3 149,642 - +0.6 149,745 - -0.1 149,781 + +0.3 149,789 - +0.9 149,789 - +0.4 149,823 + +0.3 149,831 - -0.2 149,837 - -0.6 149,931 + -0.1 149,991 + -2.0 149,991 + +0.1 150,012 + +0.2 150,032 + +0.3 150,076 - +0.0 150,234 - Atu6131 0.20 -2.1 150,348 - Atu6131 0.57 -2.1 150,367 - Atu6131 0.63 -3.4 150,380 + Atu6131 0.68 -3.7 150,388 - Atu6131 0.70 -2.8 150,388 - Atu6131 0.70 -1.1 150,405 - Atu6131 0.76 -1.2 150,535 - -0.1 150,535 - +0.2 150,540 - +0.7 150,551 + +0.7 150,551 + -0.7 150,559 - +0.1 150,559 - -1.0 150,599 + -0.3 150,599 + -0.7 150,635 + +0.6 150,635 + +0.7 150,643 - -1.5 150,645 + +0.1 150,645 + -0.7 150,650 + -0.4 150,652 + -1.2 150,653 - -0.4 150,655 + -0.1 150,658 - -1.1 150,658 - +0.2 150,663 - +0.5 150,665 + +0.6 150,673 - +0.2 150,739 + -2.0 150,792 + +0.1 150,860 + Atu6132 0.13 -0.5 150,860 + Atu6132 0.13 -0.7 150,870 + Atu6132 0.13 +1.5 150,875 - Atu6132 0.14 -0.3 150,888 + Atu6132 0.14 +1.0 150,968 - Atu6132 0.19 -0.6 150,975 + Atu6132 0.19 -0.2 150,978 - Atu6132 0.20 +0.5 150,994 + Atu6132 0.20 -0.5 151,002 - Atu6132 0.21 +0.9 151,004 + Atu6132 0.21 -0.4 151,005 - Atu6132 0.21 +0.4 151,012 - Atu6132 0.21 -0.0 151,063 - Atu6132 0.24 -0.1 151,079 + Atu6132 0.25 -0.9 151,085 + Atu6132 0.26 +0.0 151,118 - Atu6132 0.28 +0.0 151,211 + Atu6132 0.33 +0.0 151,245 - Atu6132 0.35 -2.0 151,279 + Atu6132 0.37 -0.6 151,315 - Atu6132 0.39 -0.4 151,329 - Atu6132 0.40 +0.2 151,390 - Atu6132 0.43 -0.0 151,390 - Atu6132 0.43 +0.4
Or see this region's nucleotide sequence