Strain Fitness in Agrobacterium fabrum C58 around Atu3711

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3710 and Atu3711 are separated by 154 nucleotidesAtu3711 and Atu3712 are separated by 24 nucleotides Atu3710: Atu3710 - metalloprotease, at 791,000 to 792,946 Atu3710 Atu3711: Atu3711 - hypothetical protein, at 793,101 to 794,432 Atu3711 Atu3712: Atu3712 - hypothetical protein, at 794,457 to 795,446 Atu3712 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2at 793.120 kb on - strandat 793.125 kb on - strandat 794.532 kb on - strandat 794.532 kb on - strandat 794.541 kb on - strandat 794.748 kb on - strand, within Atu3712at 794.753 kb on - strand, within Atu3712at 794.806 kb on - strand, within Atu3712

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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793,120 - -0.3
793,125 - -0.0
794,532 - +0.9
794,532 - -0.7
794,541 - +2.2
794,748 - Atu3712 0.29 +0.6
794,753 - Atu3712 0.30 -2.3
794,806 - Atu3712 0.35 -0.8

Or see this region's nucleotide sequence