Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1815 and Atu1816 are separated by 14 nucleotides Atu1816 and Atu1817 overlap by 11 nucleotides Atu1817 and Atu1818 are separated by 65 nucleotides Atu1818 and Atu1819 are separated by 202 nucleotides
Atu1815: Atu1815 - HlyD family secretion protein, at 1,795,033 to 1,796,331
Atu1815
Atu1816: Atu1816 - ABC transporter, nucleotide binding/ATPase protein, at 1,796,346 to 1,797,065
Atu1816
Atu1817: Atu1817 - hypothetical protein, at 1,797,055 to 1,798,263
Atu1817
Atu1818: Atu1818 - hypothetical protein, at 1,798,329 to 1,798,619
Atu1818
Atu1819: Atu1819 - hypothetical protein, at 1,798,822 to 1,799,211
Atu1819
Position (kb)
1797
1798
1799 Strain fitness (log2 ratio)
-2
-1
0
1 at 1796.141 kb on + strand, within Atu1815 at 1796.174 kb on - strand, within Atu1815 at 1796.175 kb on + strand, within Atu1815 at 1796.329 kb on - strand at 1796.334 kb on + strand at 1796.436 kb on - strand, within Atu1816 at 1796.436 kb on - strand, within Atu1816 at 1796.507 kb on + strand, within Atu1816 at 1796.526 kb on - strand, within Atu1816 at 1796.526 kb on - strand, within Atu1816 at 1796.536 kb on - strand, within Atu1816 at 1796.549 kb on + strand, within Atu1816 at 1796.765 kb on + strand, within Atu1816 at 1796.805 kb on + strand, within Atu1816 at 1796.846 kb on + strand, within Atu1816 at 1796.912 kb on - strand, within Atu1816 at 1796.943 kb on + strand, within Atu1816 at 1797.018 kb on + strand at 1797.068 kb on + strand at 1797.074 kb on + strand at 1797.074 kb on + strand at 1797.074 kb on + strand at 1797.122 kb on + strand at 1797.132 kb on - strand at 1797.175 kb on + strand at 1797.190 kb on + strand, within Atu1817 at 1797.221 kb on + strand, within Atu1817 at 1797.275 kb on - strand, within Atu1817 at 1797.297 kb on + strand, within Atu1817 at 1797.433 kb on - strand, within Atu1817 at 1797.444 kb on + strand, within Atu1817 at 1797.453 kb on - strand, within Atu1817 at 1797.526 kb on - strand, within Atu1817 at 1797.570 kb on - strand, within Atu1817 at 1797.610 kb on - strand, within Atu1817 at 1797.625 kb on - strand, within Atu1817 at 1797.730 kb on + strand, within Atu1817 at 1797.756 kb on + strand, within Atu1817 at 1797.757 kb on + strand, within Atu1817 at 1797.759 kb on + strand, within Atu1817 at 1797.765 kb on - strand, within Atu1817 at 1797.765 kb on - strand, within Atu1817 at 1797.844 kb on - strand, within Atu1817 at 1797.864 kb on - strand, within Atu1817 at 1797.864 kb on - strand, within Atu1817 at 1797.869 kb on - strand, within Atu1817 at 1797.919 kb on + strand, within Atu1817 at 1797.945 kb on + strand, within Atu1817 at 1798.054 kb on - strand, within Atu1817 at 1798.062 kb on - strand, within Atu1817 at 1798.090 kb on + strand, within Atu1817 at 1798.090 kb on + strand, within Atu1817 at 1798.091 kb on + strand, within Atu1817 at 1798.101 kb on + strand, within Atu1817 at 1798.109 kb on - strand, within Atu1817 at 1798.239 kb on + strand at 1798.322 kb on + strand at 1798.334 kb on - strand at 1798.441 kb on - strand, within Atu1818 at 1798.443 kb on - strand, within Atu1818 at 1798.511 kb on + strand, within Atu1818 at 1798.674 kb on + strand at 1798.682 kb on - strand at 1798.706 kb on + strand at 1798.735 kb on + strand at 1798.740 kb on + strand at 1798.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 1,796,141 + Atu1815 0.85 -0.1 1,796,174 - Atu1815 0.88 -0.2 1,796,175 + Atu1815 0.88 -0.7 1,796,329 - -1.2 1,796,334 + -0.4 1,796,436 - Atu1816 0.12 -0.7 1,796,436 - Atu1816 0.12 -0.2 1,796,507 + Atu1816 0.22 +1.2 1,796,526 - Atu1816 0.25 -0.1 1,796,526 - Atu1816 0.25 -0.1 1,796,536 - Atu1816 0.26 -0.1 1,796,549 + Atu1816 0.28 +0.8 1,796,765 + Atu1816 0.58 +0.4 1,796,805 + Atu1816 0.64 +0.0 1,796,846 + Atu1816 0.69 +0.8 1,796,912 - Atu1816 0.79 -1.6 1,796,943 + Atu1816 0.83 +0.5 1,797,018 + +0.3 1,797,068 + -0.5 1,797,074 + -0.0 1,797,074 + -0.4 1,797,074 + -0.7 1,797,122 + -1.5 1,797,132 - -1.7 1,797,175 + -0.1 1,797,190 + Atu1817 0.11 +1.0 1,797,221 + Atu1817 0.14 -0.2 1,797,275 - Atu1817 0.18 -0.1 1,797,297 + Atu1817 0.20 -0.3 1,797,433 - Atu1817 0.31 +0.4 1,797,444 + Atu1817 0.32 +0.2 1,797,453 - Atu1817 0.33 -0.8 1,797,526 - Atu1817 0.39 -0.5 1,797,570 - Atu1817 0.43 +0.6 1,797,610 - Atu1817 0.46 -0.1 1,797,625 - Atu1817 0.47 +1.5 1,797,730 + Atu1817 0.56 -0.7 1,797,756 + Atu1817 0.58 +0.5 1,797,757 + Atu1817 0.58 +1.4 1,797,759 + Atu1817 0.58 -0.7 1,797,765 - Atu1817 0.59 +0.5 1,797,765 - Atu1817 0.59 +0.2 1,797,844 - Atu1817 0.65 +0.7 1,797,864 - Atu1817 0.67 -0.5 1,797,864 - Atu1817 0.67 +0.9 1,797,869 - Atu1817 0.67 +1.0 1,797,919 + Atu1817 0.71 -0.3 1,797,945 + Atu1817 0.74 -0.7 1,798,054 - Atu1817 0.83 +0.1 1,798,062 - Atu1817 0.83 +0.5 1,798,090 + Atu1817 0.86 -1.1 1,798,090 + Atu1817 0.86 +1.2 1,798,091 + Atu1817 0.86 -0.9 1,798,101 + Atu1817 0.87 +0.1 1,798,109 - Atu1817 0.87 +0.1 1,798,239 + -0.4 1,798,322 + -1.2 1,798,334 - +0.1 1,798,441 - Atu1818 0.38 -2.3 1,798,443 - Atu1818 0.39 -0.4 1,798,511 + Atu1818 0.63 -1.9 1,798,674 + -0.2 1,798,682 - -0.2 1,798,706 + +1.5 1,798,735 + +0.8 1,798,740 + -2.3 1,798,748 - -0.3
Or see this region's nucleotide sequence