Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0801 and Atu0802 are separated by 433 nucleotides Atu0802 and Atu0803 are separated by 226 nucleotides
Atu0801: Atu0801 - chromosome segregation protein, at 796,372 to 799,839
Atu0801
Atu0802: Atu0802 - hypothetical protein, at 800,273 to 801,244
Atu0802
Atu0803: Atu0803 - pyruvate,orthophosphate dikinase, at 801,471 to 804,197
Atu0803
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1 at 799.359 kb on - strand, within Atu0801 at 799.359 kb on - strand, within Atu0801 at 799.494 kb on - strand at 799.649 kb on - strand at 799.666 kb on - strand at 799.951 kb on + strand at 799.959 kb on - strand at 799.959 kb on - strand at 799.959 kb on - strand at 799.963 kb on + strand at 799.963 kb on + strand at 799.963 kb on + strand at 799.963 kb on + strand at 799.971 kb on - strand at 800.107 kb on + strand at 800.127 kb on - strand at 800.141 kb on + strand at 800.142 kb on + strand at 800.286 kb on + strand at 800.288 kb on - strand at 800.325 kb on + strand at 800.325 kb on + strand at 800.466 kb on - strand, within Atu0802 at 800.515 kb on + strand, within Atu0802 at 800.641 kb on - strand, within Atu0802 at 800.706 kb on + strand, within Atu0802 at 800.712 kb on + strand, within Atu0802 at 800.817 kb on - strand, within Atu0802 at 800.849 kb on + strand, within Atu0802 at 800.876 kb on + strand, within Atu0802 at 800.876 kb on + strand, within Atu0802 at 800.876 kb on + strand, within Atu0802 at 800.884 kb on - strand, within Atu0802 at 800.910 kb on + strand, within Atu0802 at 800.967 kb on + strand, within Atu0802 at 801.001 kb on + strand, within Atu0802 at 801.103 kb on + strand, within Atu0802 at 801.122 kb on + strand, within Atu0802 at 801.128 kb on + strand, within Atu0802 at 801.151 kb on + strand at 801.158 kb on - strand at 801.168 kb on - strand at 801.168 kb on - strand at 801.173 kb on - strand at 801.173 kb on - strand at 801.285 kb on - strand at 801.300 kb on + strand at 801.308 kb on - strand at 801.369 kb on + strand at 801.377 kb on + strand at 801.424 kb on + strand at 801.491 kb on - strand at 801.502 kb on - strand at 801.507 kb on + strand at 801.557 kb on - strand at 801.582 kb on - strand at 801.582 kb on - strand at 801.606 kb on + strand at 801.682 kb on - strand at 801.694 kb on + strand at 801.796 kb on - strand, within Atu0803 at 801.819 kb on - strand, within Atu0803 at 801.973 kb on + strand, within Atu0803 at 801.975 kb on + strand, within Atu0803 at 802.073 kb on + strand, within Atu0803 at 802.078 kb on + strand, within Atu0803 at 802.088 kb on + strand, within Atu0803 at 802.088 kb on + strand, within Atu0803 at 802.091 kb on - strand, within Atu0803 at 802.096 kb on - strand, within Atu0803 at 802.147 kb on + strand, within Atu0803 at 802.155 kb on + strand, within Atu0803 at 802.178 kb on + strand, within Atu0803 at 802.208 kb on - strand, within Atu0803
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 799,359 - Atu0801 0.86 -1.5 799,359 - Atu0801 0.86 -0.8 799,494 - -2.4 799,649 - -2.3 799,666 - -0.1 799,951 + +0.3 799,959 - -0.2 799,959 - +1.4 799,959 - +0.5 799,963 + +0.0 799,963 + -0.9 799,963 + -0.3 799,963 + +0.1 799,971 - -0.4 800,107 + +0.2 800,127 - -0.1 800,141 + +0.1 800,142 + -0.4 800,286 + +0.6 800,288 - +0.1 800,325 + -0.3 800,325 + -1.1 800,466 - Atu0802 0.20 -0.6 800,515 + Atu0802 0.25 -0.3 800,641 - Atu0802 0.38 -0.9 800,706 + Atu0802 0.45 -0.5 800,712 + Atu0802 0.45 -0.3 800,817 - Atu0802 0.56 -0.8 800,849 + Atu0802 0.59 -0.5 800,876 + Atu0802 0.62 -1.2 800,876 + Atu0802 0.62 -0.1 800,876 + Atu0802 0.62 -0.4 800,884 - Atu0802 0.63 -0.7 800,910 + Atu0802 0.66 -0.3 800,967 + Atu0802 0.71 -1.1 801,001 + Atu0802 0.75 +1.5 801,103 + Atu0802 0.85 -2.4 801,122 + Atu0802 0.87 -0.1 801,128 + Atu0802 0.88 -2.6 801,151 + -0.9 801,158 - +0.5 801,168 - -0.4 801,168 - -1.2 801,173 - -1.1 801,173 - -1.0 801,285 - -0.2 801,300 + -1.2 801,308 - +0.1 801,369 + +0.7 801,377 + +1.5 801,424 + -0.0 801,491 - +1.1 801,502 - -1.5 801,507 + -0.4 801,557 - +1.6 801,582 - +0.4 801,582 - +0.1 801,606 + -0.1 801,682 - +1.5 801,694 + -1.3 801,796 - Atu0803 0.12 +1.1 801,819 - Atu0803 0.13 -1.1 801,973 + Atu0803 0.18 -0.5 801,975 + Atu0803 0.18 +0.3 802,073 + Atu0803 0.22 -2.7 802,078 + Atu0803 0.22 +0.7 802,088 + Atu0803 0.23 +1.1 802,088 + Atu0803 0.23 -0.1 802,091 - Atu0803 0.23 +0.0 802,096 - Atu0803 0.23 +0.9 802,147 + Atu0803 0.25 -0.9 802,155 + Atu0803 0.25 +0.6 802,178 + Atu0803 0.26 -2.1 802,208 - Atu0803 0.27 -0.1
Or see this region's nucleotide sequence