Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5503 and Atu5504 are separated by 185 nucleotides Atu5504 and Atu5505 are separated by 3 nucleotides Atu5505 and Atu5506 overlap by 4 nucleotides
Atu5503: Atu5503 - hypothetical protein, at 494,054 to 495,511
Atu5503
Atu5504: Atu5504 - hypothetical protein, at 495,697 to 496,290
Atu5504
Atu5505: Atu5505 - two component response regulator, at 496,294 to 496,959
Atu5505
Atu5506: Atu5506 - two component sensor kinase, at 496,956 to 498,314
Atu5506
Position (kb) 496
497 Strain fitness (log2 ratio) -2
-1
0
1
2 at 495.388 kb on + strand at 495.388 kb on + strand at 495.497 kb on - strand at 495.497 kb on - strand at 495.569 kb on - strand at 495.589 kb on - strand at 495.589 kb on - strand at 495.645 kb on + strand at 495.653 kb on - strand at 495.702 kb on - strand at 495.709 kb on + strand at 495.754 kb on + strand at 495.762 kb on - strand, within Atu5504 at 495.849 kb on - strand, within Atu5504 at 495.870 kb on - strand, within Atu5504 at 496.081 kb on + strand, within Atu5504 at 496.081 kb on + strand, within Atu5504 at 496.110 kb on - strand, within Atu5504 at 496.184 kb on - strand, within Atu5504 at 496.292 kb on - strand at 496.323 kb on + strand at 496.324 kb on + strand at 496.333 kb on - strand at 496.338 kb on - strand at 496.370 kb on + strand, within Atu5505 at 496.453 kb on - strand, within Atu5505 at 496.468 kb on + strand, within Atu5505 at 496.543 kb on - strand, within Atu5505 at 496.544 kb on + strand, within Atu5505 at 496.599 kb on + strand, within Atu5505 at 496.607 kb on - strand, within Atu5505 at 496.638 kb on + strand, within Atu5505 at 496.638 kb on + strand, within Atu5505 at 496.681 kb on + strand, within Atu5505 at 496.689 kb on - strand, within Atu5505 at 496.734 kb on - strand, within Atu5505 at 496.784 kb on + strand, within Atu5505 at 496.792 kb on - strand, within Atu5505 at 496.796 kb on - strand, within Atu5505 at 496.851 kb on + strand, within Atu5505 at 496.859 kb on - strand, within Atu5505 at 496.874 kb on - strand, within Atu5505 at 496.906 kb on - strand at 496.924 kb on - strand at 496.932 kb on - strand at 496.934 kb on - strand at 496.944 kb on - strand at 497.080 kb on + strand at 497.088 kb on - strand at 497.117 kb on - strand, within Atu5506 at 497.151 kb on + strand, within Atu5506 at 497.222 kb on + strand, within Atu5506 at 497.223 kb on - strand, within Atu5506 at 497.279 kb on - strand, within Atu5506 at 497.306 kb on + strand, within Atu5506 at 497.316 kb on + strand, within Atu5506 at 497.316 kb on + strand, within Atu5506 at 497.316 kb on + strand, within Atu5506 at 497.316 kb on + strand, within Atu5506 at 497.359 kb on - strand, within Atu5506 at 497.361 kb on - strand, within Atu5506 at 497.409 kb on + strand, within Atu5506 at 497.409 kb on + strand, within Atu5506 at 497.417 kb on - strand, within Atu5506 at 497.417 kb on - strand, within Atu5506 at 497.417 kb on - strand, within Atu5506 at 497.417 kb on - strand, within Atu5506 at 497.417 kb on - strand, within Atu5506 at 497.417 kb on - strand, within Atu5506 at 497.540 kb on - strand, within Atu5506 at 497.578 kb on - strand, within Atu5506 at 497.622 kb on - strand, within Atu5506 at 497.684 kb on + strand, within Atu5506 at 497.700 kb on - strand, within Atu5506 at 497.781 kb on - strand, within Atu5506 at 497.860 kb on + strand, within Atu5506 at 497.865 kb on + strand, within Atu5506
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 495,388 + +0.8 495,388 + -1.7 495,497 - -0.2 495,497 - +0.4 495,569 - -0.3 495,589 - -0.4 495,589 - +0.5 495,645 + -1.2 495,653 - +0.6 495,702 - -0.8 495,709 + +0.5 495,754 + +0.5 495,762 - Atu5504 0.11 +0.7 495,849 - Atu5504 0.26 +0.0 495,870 - Atu5504 0.29 +0.8 496,081 + Atu5504 0.65 +0.3 496,081 + Atu5504 0.65 -0.9 496,110 - Atu5504 0.70 +0.2 496,184 - Atu5504 0.82 +1.0 496,292 - +0.3 496,323 + +0.1 496,324 + -0.6 496,333 - -0.0 496,338 - +0.9 496,370 + Atu5505 0.11 +1.3 496,453 - Atu5505 0.24 -0.5 496,468 + Atu5505 0.26 +0.9 496,543 - Atu5505 0.37 +1.2 496,544 + Atu5505 0.38 +0.3 496,599 + Atu5505 0.46 -1.4 496,607 - Atu5505 0.47 +0.7 496,638 + Atu5505 0.52 -0.4 496,638 + Atu5505 0.52 +0.0 496,681 + Atu5505 0.58 +0.0 496,689 - Atu5505 0.59 +0.0 496,734 - Atu5505 0.66 +0.5 496,784 + Atu5505 0.74 +0.2 496,792 - Atu5505 0.75 +0.5 496,796 - Atu5505 0.75 +1.5 496,851 + Atu5505 0.84 +0.1 496,859 - Atu5505 0.85 +1.5 496,874 - Atu5505 0.87 -0.2 496,906 - -2.0 496,924 - +1.1 496,932 - -0.1 496,934 - -1.4 496,944 - -0.9 497,080 + -2.2 497,088 - +1.1 497,117 - Atu5506 0.12 +0.3 497,151 + Atu5506 0.14 -0.1 497,222 + Atu5506 0.20 +0.5 497,223 - Atu5506 0.20 +0.4 497,279 - Atu5506 0.24 +0.2 497,306 + Atu5506 0.26 -0.3 497,316 + Atu5506 0.26 +0.9 497,316 + Atu5506 0.26 -0.3 497,316 + Atu5506 0.26 +0.4 497,316 + Atu5506 0.26 +0.0 497,359 - Atu5506 0.30 +1.0 497,361 - Atu5506 0.30 -1.5 497,409 + Atu5506 0.33 +1.9 497,409 + Atu5506 0.33 +0.5 497,417 - Atu5506 0.34 +0.0 497,417 - Atu5506 0.34 +0.2 497,417 - Atu5506 0.34 +0.5 497,417 - Atu5506 0.34 +1.5 497,417 - Atu5506 0.34 -1.8 497,417 - Atu5506 0.34 -1.3 497,540 - Atu5506 0.43 +0.6 497,578 - Atu5506 0.46 -0.1 497,622 - Atu5506 0.49 -0.2 497,684 + Atu5506 0.54 +0.0 497,700 - Atu5506 0.55 +0.0 497,781 - Atu5506 0.61 -0.6 497,860 + Atu5506 0.67 +1.0 497,865 + Atu5506 0.67 -0.2
Or see this region's nucleotide sequence