Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3375 and Atu3376 overlap by 4 nucleotides Atu3376 and Atu3377 are separated by 7 nucleotides
Atu3375: Atu3375 - peptide ABC transporter substrate-binding protein, at 416,506 to 418,083
Atu3375
Atu3376: Atu3376 - beta-lactamase, at 418,080 to 418,928
Atu3376
Atu3377: Atu3377 - peptide ABC transporter ATPase, at 418,936 to 420,570
Atu3377
Position (kb) 418
419 Strain fitness (log2 ratio) -1
0
1
2 at 417.178 kb on + strand, within Atu3375 at 417.335 kb on + strand, within Atu3375 at 417.392 kb on - strand, within Atu3375 at 417.401 kb on + strand, within Atu3375 at 417.500 kb on + strand, within Atu3375 at 417.622 kb on + strand, within Atu3375 at 417.656 kb on + strand, within Atu3375 at 417.671 kb on + strand, within Atu3375 at 417.671 kb on + strand, within Atu3375 at 417.679 kb on - strand, within Atu3375 at 417.750 kb on + strand, within Atu3375 at 417.750 kb on + strand, within Atu3375 at 417.763 kb on - strand, within Atu3375 at 417.817 kb on + strand, within Atu3375 at 417.882 kb on - strand, within Atu3375 at 417.897 kb on - strand, within Atu3375 at 417.901 kb on - strand, within Atu3375 at 417.950 kb on + strand at 417.958 kb on - strand at 417.960 kb on + strand at 418.052 kb on + strand at 418.052 kb on + strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.093 kb on - strand at 418.106 kb on - strand at 418.186 kb on + strand, within Atu3376 at 418.186 kb on + strand, within Atu3376 at 418.249 kb on - strand, within Atu3376 at 418.264 kb on - strand, within Atu3376 at 418.378 kb on + strand, within Atu3376 at 418.404 kb on - strand, within Atu3376 at 418.475 kb on - strand, within Atu3376 at 418.576 kb on - strand, within Atu3376 at 418.578 kb on + strand, within Atu3376 at 418.586 kb on - strand, within Atu3376 at 418.621 kb on - strand, within Atu3376 at 418.661 kb on + strand, within Atu3376 at 418.709 kb on + strand, within Atu3376 at 418.756 kb on + strand, within Atu3376 at 418.842 kb on + strand, within Atu3376 at 418.850 kb on - strand at 418.886 kb on - strand at 418.905 kb on - strand at 419.034 kb on + strand at 419.034 kb on + strand at 419.042 kb on - strand at 419.133 kb on + strand, within Atu3377 at 419.135 kb on - strand, within Atu3377 at 419.243 kb on - strand, within Atu3377 at 419.323 kb on + strand, within Atu3377 at 419.328 kb on + strand, within Atu3377 at 419.336 kb on - strand, within Atu3377 at 419.341 kb on - strand, within Atu3377 at 419.343 kb on + strand, within Atu3377 at 419.349 kb on + strand, within Atu3377 at 419.349 kb on + strand, within Atu3377 at 419.349 kb on + strand, within Atu3377 at 419.351 kb on - strand, within Atu3377 at 419.405 kb on - strand, within Atu3377 at 419.431 kb on - strand, within Atu3377 at 419.455 kb on - strand, within Atu3377 at 419.455 kb on - strand, within Atu3377 at 419.476 kb on - strand, within Atu3377 at 419.497 kb on + strand, within Atu3377 at 419.602 kb on - strand, within Atu3377 at 419.698 kb on - strand, within Atu3377 at 419.766 kb on + strand, within Atu3377 at 419.774 kb on - strand, within Atu3377 at 419.799 kb on - strand, within Atu3377 at 419.847 kb on + strand, within Atu3377 at 419.860 kb on + strand, within Atu3377 at 419.906 kb on + strand, within Atu3377 at 419.918 kb on + strand, within Atu3377
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 417,178 + Atu3375 0.43 -0.8 417,335 + Atu3375 0.53 -0.4 417,392 - Atu3375 0.56 -0.8 417,401 + Atu3375 0.57 +0.8 417,500 + Atu3375 0.63 -0.5 417,622 + Atu3375 0.71 -0.4 417,656 + Atu3375 0.73 +0.8 417,671 + Atu3375 0.74 +1.2 417,671 + Atu3375 0.74 +0.0 417,679 - Atu3375 0.74 +0.1 417,750 + Atu3375 0.79 -0.1 417,750 + Atu3375 0.79 -0.9 417,763 - Atu3375 0.80 -0.2 417,817 + Atu3375 0.83 +1.8 417,882 - Atu3375 0.87 +1.2 417,897 - Atu3375 0.88 +0.6 417,901 - Atu3375 0.88 +0.3 417,950 + +0.1 417,958 - +1.2 417,960 + -0.8 418,052 + -0.1 418,052 + +0.1 418,060 - -0.5 418,060 - +0.3 418,060 - +0.1 418,060 - -0.9 418,085 + +1.0 418,085 + -0.5 418,085 + -0.6 418,085 + +0.7 418,085 + +0.2 418,085 + -0.2 418,093 - +0.2 418,106 - -0.2 418,186 + Atu3376 0.12 +0.2 418,186 + Atu3376 0.12 -0.1 418,249 - Atu3376 0.20 +0.2 418,264 - Atu3376 0.22 +0.6 418,378 + Atu3376 0.35 -0.1 418,404 - Atu3376 0.38 +0.7 418,475 - Atu3376 0.47 +2.4 418,576 - Atu3376 0.58 +0.6 418,578 + Atu3376 0.59 +0.7 418,586 - Atu3376 0.60 +0.7 418,621 - Atu3376 0.64 -0.1 418,661 + Atu3376 0.68 +1.0 418,709 + Atu3376 0.74 -0.3 418,756 + Atu3376 0.80 +0.2 418,842 + Atu3376 0.90 -0.0 418,850 - +1.2 418,886 - +0.4 418,905 - -0.2 419,034 + -0.1 419,034 + +0.4 419,042 - +0.5 419,133 + Atu3377 0.12 +1.1 419,135 - Atu3377 0.12 -0.1 419,243 - Atu3377 0.19 -0.1 419,323 + Atu3377 0.24 -0.2 419,328 + Atu3377 0.24 -0.7 419,336 - Atu3377 0.24 -0.6 419,341 - Atu3377 0.25 +0.7 419,343 + Atu3377 0.25 -0.1 419,349 + Atu3377 0.25 -0.0 419,349 + Atu3377 0.25 -0.1 419,349 + Atu3377 0.25 -0.1 419,351 - Atu3377 0.25 -0.7 419,405 - Atu3377 0.29 -0.3 419,431 - Atu3377 0.30 -1.5 419,455 - Atu3377 0.32 +0.2 419,455 - Atu3377 0.32 -0.3 419,476 - Atu3377 0.33 -0.2 419,497 + Atu3377 0.34 -1.7 419,602 - Atu3377 0.41 -0.3 419,698 - Atu3377 0.47 -1.6 419,766 + Atu3377 0.51 -0.8 419,774 - Atu3377 0.51 -0.4 419,799 - Atu3377 0.53 -0.1 419,847 + Atu3377 0.56 -0.6 419,860 + Atu3377 0.57 -0.4 419,906 + Atu3377 0.59 +0.4 419,918 + Atu3377 0.60 -0.5
Or see this region's nucleotide sequence