Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF937 and GFF938 are separated by 100 nucleotides GFF938 and GFF939 are separated by 383 nucleotides GFF939 and GFF940 are separated by 73 nucleotides
GFF937 - Arginine deiminase (EC 3.5.3.6), at 112,677 to 113,897
GFF937
GFF938 - FIG01046038: hypothetical protein, at 113,998 to 114,189
GFF938
GFF939 - Protein yjgK, at 114,573 to 115,025
GFF939
GFF940 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 115,099 to 116,103
GFF940
Position (kb)
114
115
116 Strain fitness (log2 ratio)
-1
0
1
2 at 113.592 kb on - strand, within GFF937 at 113.709 kb on + strand, within GFF937 at 113.776 kb on - strand at 113.904 kb on - strand at 114.444 kb on + strand at 114.452 kb on + strand at 114.452 kb on + strand at 114.531 kb on - strand at 114.578 kb on + strand at 114.588 kb on - strand at 114.677 kb on + strand, within GFF939 at 114.677 kb on + strand, within GFF939 at 114.677 kb on + strand, within GFF939 at 114.678 kb on - strand, within GFF939 at 114.682 kb on - strand, within GFF939 at 115.026 kb on + strand at 115.138 kb on - strand at 115.138 kb on - strand at 115.227 kb on - strand, within GFF940 at 115.296 kb on + strand, within GFF940 at 115.344 kb on - strand, within GFF940 at 115.395 kb on + strand, within GFF940 at 115.419 kb on + strand, within GFF940 at 115.603 kb on - strand, within GFF940 at 115.603 kb on - strand, within GFF940 at 115.605 kb on + strand, within GFF940 at 115.706 kb on + strand, within GFF940 at 115.746 kb on - strand, within GFF940 at 115.846 kb on - strand, within GFF940 at 115.901 kb on + strand, within GFF940
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 113,592 - GFF937 0.75 +0.4 113,709 + GFF937 0.85 +0.1 113,776 - +0.3 113,904 - -0.3 114,444 + -0.5 114,452 + +1.1 114,452 + +0.4 114,531 - -1.6 114,578 + +0.6 114,588 - -0.2 114,677 + GFF939 0.23 +1.4 114,677 + GFF939 0.23 -0.2 114,677 + GFF939 0.23 -0.4 114,678 - GFF939 0.23 +0.7 114,682 - GFF939 0.24 -0.6 115,026 + -0.0 115,138 - +0.1 115,138 - +0.1 115,227 - GFF940 0.13 -0.4 115,296 + GFF940 0.20 +0.5 115,344 - GFF940 0.24 +1.6 115,395 + GFF940 0.29 +0.5 115,419 + GFF940 0.32 -1.0 115,603 - GFF940 0.50 +1.8 115,603 - GFF940 0.50 +0.2 115,605 + GFF940 0.50 -1.3 115,706 + GFF940 0.60 -0.5 115,746 - GFF940 0.64 +0.5 115,846 - GFF940 0.74 +0.4 115,901 + GFF940 0.80 -0.9
Or see this region's nucleotide sequence