Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF939

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF937 and GFF938 are separated by 100 nucleotidesGFF938 and GFF939 are separated by 383 nucleotidesGFF939 and GFF940 are separated by 73 nucleotides GFF937 - Arginine deiminase (EC 3.5.3.6), at 112,677 to 113,897 GFF937 GFF938 - FIG01046038: hypothetical protein, at 113,998 to 114,189 GFF938 GFF939 - Protein yjgK, at 114,573 to 115,025 GFF939 GFF940 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 115,099 to 116,103 GFF940 Position (kb) 114 115 116Strain fitness (log2 ratio) -1 0 1 2at 113.592 kb on - strand, within GFF937at 113.709 kb on + strand, within GFF937at 113.776 kb on - strandat 113.904 kb on - strandat 114.444 kb on + strandat 114.452 kb on + strandat 114.452 kb on + strandat 114.531 kb on - strandat 114.578 kb on + strandat 114.588 kb on - strandat 114.677 kb on + strand, within GFF939at 114.677 kb on + strand, within GFF939at 114.677 kb on + strand, within GFF939at 114.678 kb on - strand, within GFF939at 114.682 kb on - strand, within GFF939at 115.026 kb on + strandat 115.138 kb on - strandat 115.138 kb on - strandat 115.227 kb on - strand, within GFF940at 115.296 kb on + strand, within GFF940at 115.344 kb on - strand, within GFF940at 115.395 kb on + strand, within GFF940at 115.419 kb on + strand, within GFF940at 115.603 kb on - strand, within GFF940at 115.603 kb on - strand, within GFF940at 115.605 kb on + strand, within GFF940at 115.706 kb on + strand, within GFF940at 115.746 kb on - strand, within GFF940at 115.846 kb on - strand, within GFF940at 115.901 kb on + strand, within GFF940

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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113,592 - GFF937 0.75 +0.4
113,709 + GFF937 0.85 +0.1
113,776 - +0.3
113,904 - -0.3
114,444 + -0.5
114,452 + +1.1
114,452 + +0.4
114,531 - -1.6
114,578 + +0.6
114,588 - -0.2
114,677 + GFF939 0.23 +1.4
114,677 + GFF939 0.23 -0.2
114,677 + GFF939 0.23 -0.4
114,678 - GFF939 0.23 +0.7
114,682 - GFF939 0.24 -0.6
115,026 + -0.0
115,138 - +0.1
115,138 - +0.1
115,227 - GFF940 0.13 -0.4
115,296 + GFF940 0.20 +0.5
115,344 - GFF940 0.24 +1.6
115,395 + GFF940 0.29 +0.5
115,419 + GFF940 0.32 -1.0
115,603 - GFF940 0.50 +1.8
115,603 - GFF940 0.50 +0.2
115,605 + GFF940 0.50 -1.3
115,706 + GFF940 0.60 -0.5
115,746 - GFF940 0.64 +0.5
115,846 - GFF940 0.74 +0.4
115,901 + GFF940 0.80 -0.9

Or see this region's nucleotide sequence