Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF528 and GFF529 are separated by 55 nucleotides GFF529 and GFF530 are separated by 51 nucleotides GFF530 and GFF531 are separated by 131 nucleotides
GFF528 - Nickel responsive regulator NikR, at 261,334 to 261,771
GFF528
GFF529 - '4'-phosphopantetheinyl transferase (EC 2.7.8.-)' transl_table=11, at 261,827 to 262,405
GFF529
GFF530 - Putative PerM family permease, at 262,457 to 263,506
GFF530
GFF531 - Transporter, putative, at 263,638 to 264,855
GFF531
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.468 kb on + strand, within GFF528 at 261.660 kb on + strand, within GFF528 at 261.790 kb on + strand at 261.791 kb on - strand at 262.013 kb on - strand, within GFF529 at 262.174 kb on + strand, within GFF529 at 262.175 kb on - strand, within GFF529 at 262.248 kb on + strand, within GFF529 at 262.401 kb on + strand at 262.401 kb on + strand at 262.402 kb on - strand at 262.405 kb on + strand at 262.406 kb on - strand at 262.406 kb on - strand at 262.406 kb on - strand at 262.406 kb on - strand at 262.406 kb on - strand at 262.425 kb on - strand at 262.443 kb on + strand at 262.444 kb on - strand at 262.496 kb on + strand at 262.592 kb on + strand, within GFF530 at 262.746 kb on - strand, within GFF530 at 262.795 kb on + strand, within GFF530 at 262.795 kb on + strand, within GFF530 at 262.804 kb on - strand, within GFF530 at 262.804 kb on - strand, within GFF530 at 262.823 kb on + strand, within GFF530 at 262.877 kb on - strand, within GFF530 at 262.892 kb on + strand, within GFF530 at 262.921 kb on - strand, within GFF530 at 262.996 kb on + strand, within GFF530 at 263.087 kb on + strand, within GFF530 at 263.088 kb on - strand, within GFF530 at 263.138 kb on - strand, within GFF530 at 263.152 kb on + strand, within GFF530 at 263.152 kb on + strand, within GFF530 at 263.156 kb on + strand, within GFF530 at 263.230 kb on + strand, within GFF530 at 263.237 kb on - strand, within GFF530 at 263.279 kb on - strand, within GFF530 at 263.312 kb on - strand, within GFF530 at 263.408 kb on - strand at 263.441 kb on - strand at 263.600 kb on + strand at 263.620 kb on - strand at 263.634 kb on - strand at 263.692 kb on - strand at 263.692 kb on - strand at 263.712 kb on + strand at 263.712 kb on + strand at 263.725 kb on + strand at 263.808 kb on + strand, within GFF531 at 263.809 kb on - strand, within GFF531 at 263.824 kb on + strand, within GFF531 at 263.825 kb on - strand, within GFF531 at 263.840 kb on + strand, within GFF531 at 263.864 kb on - strand, within GFF531 at 263.874 kb on - strand, within GFF531 at 263.874 kb on - strand, within GFF531 at 264.157 kb on + strand, within GFF531 at 264.225 kb on - strand, within GFF531 at 264.304 kb on + strand, within GFF531 at 264.358 kb on - strand, within GFF531 at 264.360 kb on + strand, within GFF531 at 264.378 kb on + strand, within GFF531
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 261,468 + GFF528 0.31 +0.2 261,660 + GFF528 0.74 +0.1 261,790 + +1.1 261,791 - -0.6 262,013 - GFF529 0.32 -0.8 262,174 + GFF529 0.60 +1.0 262,175 - GFF529 0.60 -0.4 262,248 + GFF529 0.73 +0.2 262,401 + +1.8 262,401 + -1.1 262,402 - -0.1 262,405 + -1.3 262,406 - +0.5 262,406 - -0.8 262,406 - +0.4 262,406 - -1.1 262,406 - +0.5 262,425 - -1.1 262,443 + +0.5 262,444 - +0.9 262,496 + -0.2 262,592 + GFF530 0.13 -0.5 262,746 - GFF530 0.28 +0.0 262,795 + GFF530 0.32 +0.6 262,795 + GFF530 0.32 -0.6 262,804 - GFF530 0.33 +0.5 262,804 - GFF530 0.33 -0.1 262,823 + GFF530 0.35 +1.6 262,877 - GFF530 0.40 +0.3 262,892 + GFF530 0.41 +0.7 262,921 - GFF530 0.44 -1.0 262,996 + GFF530 0.51 +1.1 263,087 + GFF530 0.60 +0.3 263,088 - GFF530 0.60 -0.2 263,138 - GFF530 0.65 +0.1 263,152 + GFF530 0.66 -0.8 263,152 + GFF530 0.66 -0.2 263,156 + GFF530 0.67 -0.8 263,230 + GFF530 0.74 +1.0 263,237 - GFF530 0.74 +0.4 263,279 - GFF530 0.78 +0.0 263,312 - GFF530 0.81 -0.6 263,408 - +0.5 263,441 - -0.0 263,600 + -0.1 263,620 - +0.3 263,634 - +0.5 263,692 - -0.9 263,692 - -1.1 263,712 + +0.2 263,712 + -0.7 263,725 + -2.3 263,808 + GFF531 0.14 -0.2 263,809 - GFF531 0.14 -1.1 263,824 + GFF531 0.15 +0.4 263,825 - GFF531 0.15 -0.5 263,840 + GFF531 0.17 +0.1 263,864 - GFF531 0.19 +0.0 263,874 - GFF531 0.19 -0.1 263,874 - GFF531 0.19 +0.1 264,157 + GFF531 0.43 +1.0 264,225 - GFF531 0.48 -0.3 264,304 + GFF531 0.55 -0.4 264,358 - GFF531 0.59 -0.7 264,360 + GFF531 0.59 +0.2 264,378 + GFF531 0.61 -1.1
Or see this region's nucleotide sequence