Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF504 and GFF505 are separated by 5 nucleotides GFF505 and GFF506 are separated by 280 nucleotides GFF506 and GFF507 are separated by 12 nucleotides
GFF504 - Putative regulator, at 233,008 to 233,610
GFF504
GFF505 - Phage-like lysozyme, at 233,616 to 233,972
GFF505
GFF506 - Putative inner membrane protein, at 234,253 to 235,842
GFF506
GFF507 - Cytoplasmic trehalase (EC 3.2.1.28), at 235,855 to 237,504
GFF507
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.511 kb on + strand, within GFF504 at 233.760 kb on + strand, within GFF505 at 233.760 kb on + strand, within GFF505 at 233.819 kb on + strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.877 kb on - strand, within GFF505 at 233.924 kb on + strand, within GFF505 at 234.001 kb on + strand at 234.001 kb on + strand at 234.185 kb on - strand at 234.188 kb on + strand at 234.204 kb on + strand at 234.252 kb on - strand at 234.298 kb on - strand at 234.477 kb on + strand, within GFF506 at 234.477 kb on + strand, within GFF506 at 234.518 kb on - strand, within GFF506 at 234.590 kb on + strand, within GFF506 at 234.591 kb on - strand, within GFF506 at 234.695 kb on + strand, within GFF506 at 234.705 kb on + strand, within GFF506 at 234.745 kb on + strand, within GFF506 at 234.881 kb on - strand, within GFF506 at 234.881 kb on - strand, within GFF506 at 235.017 kb on + strand, within GFF506 at 235.017 kb on + strand, within GFF506 at 235.018 kb on - strand, within GFF506 at 235.018 kb on - strand, within GFF506 at 235.018 kb on - strand, within GFF506 at 235.025 kb on + strand, within GFF506 at 235.182 kb on + strand, within GFF506 at 235.182 kb on + strand, within GFF506 at 235.182 kb on + strand, within GFF506 at 235.183 kb on - strand, within GFF506 at 235.183 kb on - strand, within GFF506 at 235.205 kb on + strand, within GFF506 at 235.206 kb on - strand, within GFF506 at 235.206 kb on - strand, within GFF506 at 235.206 kb on - strand, within GFF506 at 235.218 kb on + strand, within GFF506 at 235.257 kb on + strand, within GFF506 at 235.429 kb on - strand, within GFF506 at 235.438 kb on - strand, within GFF506 at 235.483 kb on - strand, within GFF506 at 235.563 kb on + strand, within GFF506 at 235.643 kb on + strand, within GFF506 at 235.644 kb on - strand, within GFF506 at 235.644 kb on - strand, within GFF506 at 235.686 kb on + strand at 235.746 kb on + strand at 235.795 kb on - strand at 235.825 kb on + strand at 235.969 kb on - strand at 236.189 kb on - strand, within GFF507 at 236.294 kb on + strand, within GFF507 at 236.295 kb on - strand, within GFF507 at 236.295 kb on - strand, within GFF507 at 236.330 kb on + strand, within GFF507 at 236.413 kb on - strand, within GFF507 at 236.483 kb on - strand, within GFF507 at 236.747 kb on + strand, within GFF507
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 233,511 + GFF504 0.83 -0.3 233,760 + GFF505 0.40 +0.0 233,760 + GFF505 0.40 +0.1 233,819 + GFF505 0.57 -1.0 233,853 - GFF505 0.66 +0.9 233,853 - GFF505 0.66 -0.4 233,853 - GFF505 0.66 -0.3 233,877 - GFF505 0.73 -1.4 233,924 + GFF505 0.86 -0.1 234,001 + -0.1 234,001 + -1.3 234,185 - -1.9 234,188 + -0.0 234,204 + -0.1 234,252 - +0.4 234,298 - -0.2 234,477 + GFF506 0.14 +0.7 234,477 + GFF506 0.14 -1.1 234,518 - GFF506 0.17 -0.1 234,590 + GFF506 0.21 +0.5 234,591 - GFF506 0.21 +0.1 234,695 + GFF506 0.28 -0.3 234,705 + GFF506 0.28 +0.1 234,745 + GFF506 0.31 -0.7 234,881 - GFF506 0.39 -0.3 234,881 - GFF506 0.39 -0.7 235,017 + GFF506 0.48 -0.4 235,017 + GFF506 0.48 -0.6 235,018 - GFF506 0.48 +0.5 235,018 - GFF506 0.48 +0.1 235,018 - GFF506 0.48 -0.2 235,025 + GFF506 0.49 +0.1 235,182 + GFF506 0.58 +0.4 235,182 + GFF506 0.58 -0.4 235,182 + GFF506 0.58 -0.3 235,183 - GFF506 0.58 -0.3 235,183 - GFF506 0.58 -1.3 235,205 + GFF506 0.60 +0.0 235,206 - GFF506 0.60 +1.9 235,206 - GFF506 0.60 -2.3 235,206 - GFF506 0.60 -0.6 235,218 + GFF506 0.61 +0.2 235,257 + GFF506 0.63 +0.6 235,429 - GFF506 0.74 -1.0 235,438 - GFF506 0.75 -0.6 235,483 - GFF506 0.77 -1.0 235,563 + GFF506 0.82 +0.9 235,643 + GFF506 0.87 -0.2 235,644 - GFF506 0.87 -0.5 235,644 - GFF506 0.87 -1.6 235,686 + +0.1 235,746 + +1.1 235,795 - +0.2 235,825 + -0.9 235,969 - +0.2 236,189 - GFF507 0.20 +0.6 236,294 + GFF507 0.27 +1.4 236,295 - GFF507 0.27 -0.0 236,295 - GFF507 0.27 +0.2 236,330 + GFF507 0.29 -0.2 236,413 - GFF507 0.34 -0.6 236,483 - GFF507 0.38 -0.3 236,747 + GFF507 0.54 +0.4
Or see this region's nucleotide sequence