Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF496

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF495 and GFF496 are separated by 261 nucleotidesGFF496 and GFF497 are separated by 53 nucleotides GFF495 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, at 221,522 to 222,808 GFF495 GFF496 - Protein YhjJ, putative peptidase, at 223,070 to 224,515 GFF496 GFF497 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 224,569 to 225,498 GFF497 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 222.153 kb on - strand, within GFF495at 222.153 kb on - strand, within GFF495at 222.191 kb on - strand, within GFF495at 222.200 kb on + strand, within GFF495at 222.201 kb on - strand, within GFF495at 222.201 kb on - strand, within GFF495at 222.201 kb on - strand, within GFF495at 222.202 kb on + strand, within GFF495at 222.212 kb on - strand, within GFF495at 222.284 kb on + strand, within GFF495at 222.285 kb on - strand, within GFF495at 222.440 kb on - strand, within GFF495at 222.490 kb on + strand, within GFF495at 222.510 kb on + strand, within GFF495at 222.510 kb on + strand, within GFF495at 222.592 kb on + strand, within GFF495at 222.655 kb on + strand, within GFF495at 222.655 kb on + strand, within GFF495at 222.736 kb on - strandat 222.764 kb on - strandat 222.819 kb on + strandat 222.819 kb on + strandat 222.860 kb on - strandat 222.860 kb on - strandat 222.883 kb on + strandat 222.883 kb on + strandat 222.883 kb on + strandat 222.883 kb on + strandat 222.884 kb on - strandat 222.884 kb on - strandat 222.897 kb on + strandat 222.961 kb on - strandat 222.967 kb on + strandat 223.089 kb on - strandat 223.089 kb on - strandat 223.196 kb on - strandat 223.216 kb on + strand, within GFF496at 223.395 kb on - strand, within GFF496at 223.449 kb on - strand, within GFF496at 223.468 kb on + strand, within GFF496at 223.519 kb on + strand, within GFF496at 223.520 kb on - strand, within GFF496at 223.546 kb on + strand, within GFF496at 223.547 kb on - strand, within GFF496at 223.822 kb on + strand, within GFF496at 223.823 kb on - strand, within GFF496at 223.858 kb on + strand, within GFF496at 223.859 kb on - strand, within GFF496at 224.056 kb on + strand, within GFF496at 224.056 kb on + strand, within GFF496at 224.057 kb on - strand, within GFF496at 224.728 kb on + strand, within GFF497at 224.818 kb on + strand, within GFF497at 224.949 kb on - strand, within GFF497at 224.998 kb on - strand, within GFF497at 224.998 kb on - strand, within GFF497at 224.998 kb on - strand, within GFF497at 225.090 kb on + strand, within GFF497at 225.110 kb on + strand, within GFF497at 225.110 kb on + strand, within GFF497at 225.197 kb on + strand, within GFF497at 225.234 kb on - strand, within GFF497at 225.234 kb on - strand, within GFF497at 225.236 kb on + strand, within GFF497at 225.236 kb on + strand, within GFF497at 225.237 kb on - strand, within GFF497at 225.280 kb on - strand, within GFF497at 225.350 kb on + strand, within GFF497at 225.351 kb on - strand, within GFF497at 225.390 kb on + strand, within GFF497at 225.390 kb on + strand, within GFF497at 225.392 kb on + strand, within GFF497at 225.392 kb on + strand, within GFF497at 225.403 kb on - strand, within GFF497at 225.403 kb on - strand, within GFF497at 225.403 kb on - strand, within GFF497at 225.498 kb on + strandat 225.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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222,153 - GFF495 0.49 -0.8
222,153 - GFF495 0.49 +0.1
222,191 - GFF495 0.52 -2.0
222,200 + GFF495 0.53 -0.5
222,201 - GFF495 0.53 -1.2
222,201 - GFF495 0.53 +1.0
222,201 - GFF495 0.53 -0.0
222,202 + GFF495 0.53 -1.1
222,212 - GFF495 0.54 -0.8
222,284 + GFF495 0.59 -0.3
222,285 - GFF495 0.59 -2.6
222,440 - GFF495 0.71 -0.1
222,490 + GFF495 0.75 +0.6
222,510 + GFF495 0.77 -0.3
222,510 + GFF495 0.77 -0.1
222,592 + GFF495 0.83 -1.4
222,655 + GFF495 0.88 +0.1
222,655 + GFF495 0.88 -0.3
222,736 - +0.4
222,764 - -0.4
222,819 + +0.7
222,819 + -0.5
222,860 - -0.3
222,860 - -0.0
222,883 + -1.0
222,883 + -1.2
222,883 + -0.8
222,883 + -0.7
222,884 - +0.2
222,884 - -0.8
222,897 + -0.7
222,961 - -1.9
222,967 + +0.6
223,089 - -0.3
223,089 - -0.4
223,196 - +0.3
223,216 + GFF496 0.10 +1.0
223,395 - GFF496 0.22 -0.5
223,449 - GFF496 0.26 -0.0
223,468 + GFF496 0.28 -0.3
223,519 + GFF496 0.31 -0.2
223,520 - GFF496 0.31 +1.2
223,546 + GFF496 0.33 +0.5
223,547 - GFF496 0.33 -0.1
223,822 + GFF496 0.52 -0.3
223,823 - GFF496 0.52 -0.2
223,858 + GFF496 0.54 +0.2
223,859 - GFF496 0.55 -0.0
224,056 + GFF496 0.68 +0.2
224,056 + GFF496 0.68 -0.4
224,057 - GFF496 0.68 -0.1
224,728 + GFF497 0.17 +1.8
224,818 + GFF497 0.27 -1.0
224,949 - GFF497 0.41 +0.1
224,998 - GFF497 0.46 -0.6
224,998 - GFF497 0.46 -0.2
224,998 - GFF497 0.46 -0.9
225,090 + GFF497 0.56 +0.3
225,110 + GFF497 0.58 -0.4
225,110 + GFF497 0.58 -0.4
225,197 + GFF497 0.68 -0.2
225,234 - GFF497 0.72 +0.0
225,234 - GFF497 0.72 -1.7
225,236 + GFF497 0.72 +0.3
225,236 + GFF497 0.72 -0.4
225,237 - GFF497 0.72 +0.1
225,280 - GFF497 0.76 -1.2
225,350 + GFF497 0.84 -0.2
225,351 - GFF497 0.84 -0.7
225,390 + GFF497 0.88 +0.1
225,390 + GFF497 0.88 +0.6
225,392 + GFF497 0.88 +0.2
225,392 + GFF497 0.88 -0.3
225,403 - GFF497 0.90 +0.2
225,403 - GFF497 0.90 -0.3
225,403 - GFF497 0.90 -0.5
225,498 + -0.0
225,499 - -0.4

Or see this region's nucleotide sequence