Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3803 and GFF3804 are separated by 51 nucleotides GFF3804 and GFF3805 are separated by 70 nucleotides GFF3805 and GFF3806 are separated by 2 nucleotides GFF3806 and GFF3807 are separated by 50 nucleotides
GFF3803 - Putative n-hydroxybenzoate hydroxylase, at 71,888 to 73,081
GFF3803
GFF3804 - tRNA-dihydrouridine synthase C (EC 1.-.-.-), at 73,133 to 74,128
GFF3804
GFF3805 - FIG01045646: hypothetical protein, at 74,199 to 74,396
GFF3805
GFF3806 - FIG01045848: hypothetical protein, at 74,399 to 74,536
GFF3806
GFF3807 - RND efflux system, outer membrane lipoprotein, NodT family, at 74,587 to 76,023
GFF3807
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.217 kb on + strand, within GFF3803 at 72.218 kb on - strand, within GFF3803 at 72.218 kb on - strand, within GFF3803 at 72.379 kb on + strand, within GFF3803 at 72.435 kb on + strand, within GFF3803 at 72.558 kb on - strand, within GFF3803 at 72.788 kb on + strand, within GFF3803 at 72.789 kb on - strand, within GFF3803 at 72.790 kb on + strand, within GFF3803 at 72.790 kb on + strand, within GFF3803 at 72.790 kb on + strand, within GFF3803 at 72.790 kb on + strand, within GFF3803 at 72.902 kb on - strand, within GFF3803 at 72.986 kb on - strand at 73.043 kb on + strand at 73.098 kb on - strand at 73.730 kb on - strand, within GFF3804 at 73.826 kb on - strand, within GFF3804 at 73.826 kb on - strand, within GFF3804 at 73.905 kb on - strand, within GFF3804 at 73.918 kb on + strand, within GFF3804 at 73.945 kb on - strand, within GFF3804 at 73.947 kb on + strand, within GFF3804 at 73.948 kb on - strand, within GFF3804 at 73.956 kb on - strand, within GFF3804 at 73.957 kb on + strand, within GFF3804 at 73.992 kb on - strand, within GFF3804 at 74.009 kb on - strand, within GFF3804 at 74.028 kb on + strand, within GFF3804 at 74.029 kb on - strand at 74.134 kb on - strand at 74.162 kb on + strand at 74.163 kb on - strand at 74.163 kb on - strand at 74.163 kb on - strand at 74.163 kb on - strand at 75.004 kb on + strand, within GFF3807 at 75.005 kb on - strand, within GFF3807 at 75.005 kb on - strand, within GFF3807 at 75.006 kb on + strand, within GFF3807 at 75.015 kb on + strand, within GFF3807 at 75.051 kb on - strand, within GFF3807 at 75.051 kb on - strand, within GFF3807
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 72,217 + GFF3803 0.28 -0.6 72,218 - GFF3803 0.28 +0.1 72,218 - GFF3803 0.28 +0.2 72,379 + GFF3803 0.41 -0.2 72,435 + GFF3803 0.46 -0.9 72,558 - GFF3803 0.56 -0.1 72,788 + GFF3803 0.75 -0.1 72,789 - GFF3803 0.75 +1.3 72,790 + GFF3803 0.76 +0.6 72,790 + GFF3803 0.76 -0.3 72,790 + GFF3803 0.76 +2.6 72,790 + GFF3803 0.76 -0.2 72,902 - GFF3803 0.85 +0.4 72,986 - +0.3 73,043 + -1.3 73,098 - +0.1 73,730 - GFF3804 0.60 +0.6 73,826 - GFF3804 0.70 +1.0 73,826 - GFF3804 0.70 +0.7 73,905 - GFF3804 0.78 -0.3 73,918 + GFF3804 0.79 -0.3 73,945 - GFF3804 0.82 -1.0 73,947 + GFF3804 0.82 +0.7 73,948 - GFF3804 0.82 +1.8 73,956 - GFF3804 0.83 +0.3 73,957 + GFF3804 0.83 -0.1 73,992 - GFF3804 0.86 +0.4 74,009 - GFF3804 0.88 +0.9 74,028 + GFF3804 0.90 -0.5 74,029 - +0.9 74,134 - +0.6 74,162 + -0.0 74,163 - -0.2 74,163 - +0.3 74,163 - +0.6 74,163 - +0.7 75,004 + GFF3807 0.29 +0.6 75,005 - GFF3807 0.29 +1.6 75,005 - GFF3807 0.29 -2.5 75,006 + GFF3807 0.29 -0.4 75,015 + GFF3807 0.30 -0.4 75,051 - GFF3807 0.32 +0.1 75,051 - GFF3807 0.32 -0.2
Or see this region's nucleotide sequence