Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2866

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2865 and GFF2866 are separated by 162 nucleotidesGFF2866 and GFF2867 are separated by 485 nucleotidesGFF2867 and GFF2868 are separated by 96 nucleotides GFF2865 - Mobile element protein, at 382,126 to 382,983 GFF2865 GFF2866 - Phage integrase, at 383,146 to 383,475 GFF2866 GFF2867 - hypothetical protein, at 383,961 to 384,161 GFF2867 GFF2868 - hypothetical protein, at 384,258 to 384,386 GFF2868 Position (kb) 383 384Strain fitness (log2 ratio) -1 0 1at 382.491 kb on + strand, within GFF2865at 382.491 kb on + strand, within GFF2865at 382.494 kb on - strand, within GFF2865at 382.494 kb on - strand, within GFF2865at 382.574 kb on - strand, within GFF2865at 382.601 kb on + strand, within GFF2865at 382.660 kb on + strand, within GFF2865at 382.705 kb on - strand, within GFF2865at 382.942 kb on - strandat 383.083 kb on + strandat 383.084 kb on - strandat 383.410 kb on - strand, within GFF2866at 383.410 kb on - strand, within GFF2866at 383.876 kb on - strandat 383.934 kb on + strandat 383.958 kb on + strandat 384.005 kb on + strand, within GFF2867at 384.053 kb on + strand, within GFF2867at 384.053 kb on + strand, within GFF2867at 384.144 kb on - strandat 384.315 kb on + strand, within GFF2868at 384.377 kb on + strandat 384.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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382,491 + GFF2865 0.43 -0.3
382,491 + GFF2865 0.43 +0.2
382,494 - GFF2865 0.43 +0.3
382,494 - GFF2865 0.43 -0.6
382,574 - GFF2865 0.52 -0.7
382,601 + GFF2865 0.55 +0.0
382,660 + GFF2865 0.62 +0.6
382,705 - GFF2865 0.67 +0.0
382,942 - -0.5
383,083 + -0.1
383,084 - +0.5
383,410 - GFF2866 0.80 -0.3
383,410 - GFF2866 0.80 -0.8
383,876 - -0.2
383,934 + +0.8
383,958 + -1.0
384,005 + GFF2867 0.22 -1.6
384,053 + GFF2867 0.46 +0.5
384,053 + GFF2867 0.46 -0.3
384,144 - +0.2
384,315 + GFF2868 0.44 -0.2
384,377 + -0.5
384,404 - +1.2

Or see this region's nucleotide sequence