Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2502

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2501 and GFF2502 are separated by 348 nucleotidesGFF2502 and GFF2503 are separated by 220 nucleotides GFF2501 - FIG00638667: hypothetical protein, at 18,947 to 19,339 GFF2501 GFF2502 - hypothetical protein, at 19,688 to 19,810 GFF2502 GFF2503 - Putative transport protein, at 20,031 to 21,218 GFF2503 Position (kb) 19 20Strain fitness (log2 ratio) -1 0 1at 18.753 kb on + strandat 18.765 kb on + strandat 19.067 kb on + strand, within GFF2501at 19.396 kb on - strandat 19.447 kb on - strandat 19.544 kb on + strandat 20.028 kb on + strandat 20.040 kb on - strandat 20.043 kb on - strandat 20.077 kb on - strandat 20.275 kb on + strand, within GFF2503at 20.434 kb on + strand, within GFF2503at 20.534 kb on + strand, within GFF2503at 20.595 kb on + strand, within GFF2503at 20.596 kb on - strand, within GFF2503at 20.733 kb on + strand, within GFF2503at 20.807 kb on - strand, within GFF2503at 20.807 kb on - strand, within GFF2503

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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18,753 + -0.1
18,765 + -1.0
19,067 + GFF2501 0.31 -0.1
19,396 - -0.3
19,447 - -0.6
19,544 + -1.1
20,028 + +0.4
20,040 - -0.4
20,043 - -0.8
20,077 - +0.1
20,275 + GFF2503 0.21 -0.0
20,434 + GFF2503 0.34 -0.9
20,534 + GFF2503 0.42 -1.5
20,595 + GFF2503 0.47 +0.4
20,596 - GFF2503 0.48 +0.2
20,733 + GFF2503 0.59 -0.5
20,807 - GFF2503 0.65 -0.6
20,807 - GFF2503 0.65 -0.6

Or see this region's nucleotide sequence