Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2417 and GFF2418 overlap by 8 nucleotides GFF2418 and GFF2419 overlap by 4 nucleotides GFF2419 and GFF2420 are separated by 155 nucleotides
GFF2417 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3), at 29,969 to 30,778
GFF2417
GFF2418 - Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), at 30,771 to 31,400
GFF2418
GFF2419 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 31,397 to 33,775
GFF2419
GFF2420 - Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C, at 33,931 to 36,246
GFF2420
Position (kb)
31
32
33
34 Strain fitness (log2 ratio)
-2
-1
0
1 at 30.410 kb on + strand, within GFF2417 at 30.510 kb on + strand, within GFF2417 at 30.563 kb on + strand, within GFF2417 at 30.563 kb on + strand, within GFF2417 at 30.563 kb on + strand, within GFF2417 at 30.693 kb on + strand, within GFF2417 at 30.768 kb on - strand at 30.992 kb on + strand, within GFF2418 at 31.055 kb on - strand, within GFF2418 at 31.405 kb on + strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.607 kb on - strand at 31.633 kb on + strand at 31.918 kb on + strand, within GFF2419 at 31.937 kb on - strand, within GFF2419 at 32.091 kb on - strand, within GFF2419 at 32.121 kb on + strand, within GFF2419 at 32.176 kb on - strand, within GFF2419 at 32.219 kb on - strand, within GFF2419 at 32.240 kb on + strand, within GFF2419 at 32.241 kb on - strand, within GFF2419 at 32.241 kb on - strand, within GFF2419 at 32.250 kb on + strand, within GFF2419 at 32.251 kb on - strand, within GFF2419 at 32.318 kb on + strand, within GFF2419 at 32.362 kb on - strand, within GFF2419 at 32.395 kb on + strand, within GFF2419 at 32.395 kb on + strand, within GFF2419 at 32.606 kb on + strand, within GFF2419 at 32.860 kb on - strand, within GFF2419 at 33.048 kb on + strand, within GFF2419 at 33.056 kb on - strand, within GFF2419 at 33.157 kb on + strand, within GFF2419 at 33.158 kb on - strand, within GFF2419 at 33.158 kb on - strand, within GFF2419 at 33.158 kb on - strand, within GFF2419 at 33.298 kb on - strand, within GFF2419 at 33.427 kb on + strand, within GFF2419 at 33.427 kb on + strand, within GFF2419 at 34.365 kb on + strand, within GFF2420 at 34.563 kb on + strand, within GFF2420 at 34.656 kb on + strand, within GFF2420 at 34.659 kb on - strand, within GFF2420 at 34.700 kb on + strand, within GFF2420
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 30,410 + GFF2417 0.54 -0.0 30,510 + GFF2417 0.67 +0.4 30,563 + GFF2417 0.73 -1.2 30,563 + GFF2417 0.73 +0.8 30,563 + GFF2417 0.73 -0.6 30,693 + GFF2417 0.89 +0.9 30,768 - +0.6 30,992 + GFF2418 0.35 -0.0 31,055 - GFF2418 0.45 +0.0 31,405 + -1.9 31,406 - +1.0 31,406 - -0.2 31,607 - +0.2 31,633 + -1.1 31,918 + GFF2419 0.22 -0.4 31,937 - GFF2419 0.23 -0.2 32,091 - GFF2419 0.29 -0.8 32,121 + GFF2419 0.30 +0.4 32,176 - GFF2419 0.33 +0.7 32,219 - GFF2419 0.35 -0.4 32,240 + GFF2419 0.35 -1.9 32,241 - GFF2419 0.35 -0.4 32,241 - GFF2419 0.35 -0.8 32,250 + GFF2419 0.36 -0.1 32,251 - GFF2419 0.36 -0.3 32,318 + GFF2419 0.39 -0.1 32,362 - GFF2419 0.41 +0.4 32,395 + GFF2419 0.42 -0.3 32,395 + GFF2419 0.42 -0.7 32,606 + GFF2419 0.51 -0.1 32,860 - GFF2419 0.61 -0.6 33,048 + GFF2419 0.69 +0.7 33,056 - GFF2419 0.70 -0.2 33,157 + GFF2419 0.74 -1.1 33,158 - GFF2419 0.74 -0.2 33,158 - GFF2419 0.74 -0.5 33,158 - GFF2419 0.74 -0.9 33,298 - GFF2419 0.80 +0.3 33,427 + GFF2419 0.85 +0.5 33,427 + GFF2419 0.85 -0.9 34,365 + GFF2420 0.19 -0.2 34,563 + GFF2420 0.27 -0.3 34,656 + GFF2420 0.31 -0.3 34,659 - GFF2420 0.31 +0.4 34,700 + GFF2420 0.33 +1.4
Or see this region's nucleotide sequence