Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2419

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2417 and GFF2418 overlap by 8 nucleotidesGFF2418 and GFF2419 overlap by 4 nucleotidesGFF2419 and GFF2420 are separated by 155 nucleotides GFF2417 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3), at 29,969 to 30,778 GFF2417 GFF2418 - Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), at 30,771 to 31,400 GFF2418 GFF2419 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 31,397 to 33,775 GFF2419 GFF2420 - Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C, at 33,931 to 36,246 GFF2420 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -2 -1 0 1at 30.410 kb on + strand, within GFF2417at 30.510 kb on + strand, within GFF2417at 30.563 kb on + strand, within GFF2417at 30.563 kb on + strand, within GFF2417at 30.563 kb on + strand, within GFF2417at 30.693 kb on + strand, within GFF2417at 30.768 kb on - strandat 30.992 kb on + strand, within GFF2418at 31.055 kb on - strand, within GFF2418at 31.405 kb on + strandat 31.406 kb on - strandat 31.406 kb on - strandat 31.607 kb on - strandat 31.633 kb on + strandat 31.918 kb on + strand, within GFF2419at 31.937 kb on - strand, within GFF2419at 32.091 kb on - strand, within GFF2419at 32.121 kb on + strand, within GFF2419at 32.176 kb on - strand, within GFF2419at 32.219 kb on - strand, within GFF2419at 32.240 kb on + strand, within GFF2419at 32.241 kb on - strand, within GFF2419at 32.241 kb on - strand, within GFF2419at 32.250 kb on + strand, within GFF2419at 32.251 kb on - strand, within GFF2419at 32.318 kb on + strand, within GFF2419at 32.362 kb on - strand, within GFF2419at 32.395 kb on + strand, within GFF2419at 32.395 kb on + strand, within GFF2419at 32.606 kb on + strand, within GFF2419at 32.860 kb on - strand, within GFF2419at 33.048 kb on + strand, within GFF2419at 33.056 kb on - strand, within GFF2419at 33.157 kb on + strand, within GFF2419at 33.158 kb on - strand, within GFF2419at 33.158 kb on - strand, within GFF2419at 33.158 kb on - strand, within GFF2419at 33.298 kb on - strand, within GFF2419at 33.427 kb on + strand, within GFF2419at 33.427 kb on + strand, within GFF2419at 34.365 kb on + strand, within GFF2420at 34.563 kb on + strand, within GFF2420at 34.656 kb on + strand, within GFF2420at 34.659 kb on - strand, within GFF2420at 34.700 kb on + strand, within GFF2420

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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30,410 + GFF2417 0.54 -0.0
30,510 + GFF2417 0.67 +0.4
30,563 + GFF2417 0.73 -1.2
30,563 + GFF2417 0.73 +0.8
30,563 + GFF2417 0.73 -0.6
30,693 + GFF2417 0.89 +0.9
30,768 - +0.6
30,992 + GFF2418 0.35 -0.0
31,055 - GFF2418 0.45 +0.0
31,405 + -1.9
31,406 - +1.0
31,406 - -0.2
31,607 - +0.2
31,633 + -1.1
31,918 + GFF2419 0.22 -0.4
31,937 - GFF2419 0.23 -0.2
32,091 - GFF2419 0.29 -0.8
32,121 + GFF2419 0.30 +0.4
32,176 - GFF2419 0.33 +0.7
32,219 - GFF2419 0.35 -0.4
32,240 + GFF2419 0.35 -1.9
32,241 - GFF2419 0.35 -0.4
32,241 - GFF2419 0.35 -0.8
32,250 + GFF2419 0.36 -0.1
32,251 - GFF2419 0.36 -0.3
32,318 + GFF2419 0.39 -0.1
32,362 - GFF2419 0.41 +0.4
32,395 + GFF2419 0.42 -0.3
32,395 + GFF2419 0.42 -0.7
32,606 + GFF2419 0.51 -0.1
32,860 - GFF2419 0.61 -0.6
33,048 + GFF2419 0.69 +0.7
33,056 - GFF2419 0.70 -0.2
33,157 + GFF2419 0.74 -1.1
33,158 - GFF2419 0.74 -0.2
33,158 - GFF2419 0.74 -0.5
33,158 - GFF2419 0.74 -0.9
33,298 - GFF2419 0.80 +0.3
33,427 + GFF2419 0.85 +0.5
33,427 + GFF2419 0.85 -0.9
34,365 + GFF2420 0.19 -0.2
34,563 + GFF2420 0.27 -0.3
34,656 + GFF2420 0.31 -0.3
34,659 - GFF2420 0.31 +0.4
34,700 + GFF2420 0.33 +1.4

Or see this region's nucleotide sequence