Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2309 and GFF2310 are separated by 84 nucleotides GFF2310 and GFF2311 overlap by 4 nucleotides GFF2311 and GFF2312 are separated by 92 nucleotides GFF2312 and GFF2313 are separated by 54 nucleotides
GFF2309 - FIG074102: hypothetical protein, at 96,039 to 96,278
GFF2309
GFF2310 - hypothetical protein, at 96,363 to 96,503
GFF2310
GFF2311 - Ribonuclease E inhibitor RraA, at 96,500 to 96,985
GFF2311
GFF2312 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74), at 97,078 to 98,019
GFF2312
GFF2313 - ATP-dependent hsl protease ATP-binding subunit HslU, at 98,074 to 99,405
GFF2313
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 96.203 kb on + strand, within GFF2309 at 96.336 kb on + strand at 96.393 kb on + strand, within GFF2310 at 96.395 kb on + strand, within GFF2310 at 96.438 kb on - strand, within GFF2310 at 96.713 kb on - strand, within GFF2311 at 96.979 kb on - strand at 97.023 kb on - strand at 97.023 kb on - strand at 97.037 kb on - strand at 97.069 kb on - strand at 97.069 kb on - strand at 97.118 kb on - strand at 97.195 kb on + strand, within GFF2312 at 97.196 kb on - strand, within GFF2312 at 97.276 kb on - strand, within GFF2312 at 97.303 kb on + strand, within GFF2312 at 97.387 kb on - strand, within GFF2312 at 97.389 kb on + strand, within GFF2312 at 97.393 kb on - strand, within GFF2312 at 97.407 kb on + strand, within GFF2312 at 97.407 kb on + strand, within GFF2312 at 97.410 kb on + strand, within GFF2312 at 97.477 kb on - strand, within GFF2312 at 97.490 kb on + strand, within GFF2312 at 97.511 kb on - strand, within GFF2312 at 97.511 kb on - strand, within GFF2312 at 97.511 kb on - strand, within GFF2312 at 97.583 kb on + strand, within GFF2312 at 97.645 kb on + strand, within GFF2312 at 97.683 kb on + strand, within GFF2312 at 97.783 kb on - strand, within GFF2312 at 97.809 kb on - strand, within GFF2312 at 97.886 kb on + strand, within GFF2312 at 98.077 kb on + strand at 98.077 kb on + strand at 98.078 kb on - strand at 98.078 kb on - strand at 98.092 kb on + strand at 98.135 kb on + strand at 98.135 kb on + strand at 98.136 kb on - strand at 98.281 kb on - strand, within GFF2313 at 98.281 kb on - strand, within GFF2313 at 98.502 kb on + strand, within GFF2313 at 98.503 kb on - strand, within GFF2313 at 98.503 kb on - strand, within GFF2313 at 98.564 kb on - strand, within GFF2313 at 98.576 kb on - strand, within GFF2313 at 98.576 kb on - strand, within GFF2313 at 98.619 kb on + strand, within GFF2313 at 98.643 kb on + strand, within GFF2313 at 98.764 kb on - strand, within GFF2313 at 98.802 kb on + strand, within GFF2313 at 98.854 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 96,203 + GFF2309 0.68 -0.0 96,336 + +0.3 96,393 + GFF2310 0.21 +0.7 96,395 + GFF2310 0.23 -0.0 96,438 - GFF2310 0.53 +0.6 96,713 - GFF2311 0.44 -1.8 96,979 - -3.0 97,023 - -0.2 97,023 - -0.2 97,037 - -0.3 97,069 - +0.1 97,069 - -0.2 97,118 - +0.3 97,195 + GFF2312 0.12 +0.5 97,196 - GFF2312 0.13 +0.0 97,276 - GFF2312 0.21 -0.3 97,303 + GFF2312 0.24 -0.3 97,387 - GFF2312 0.33 -0.4 97,389 + GFF2312 0.33 +0.6 97,393 - GFF2312 0.33 +0.4 97,407 + GFF2312 0.35 -0.3 97,407 + GFF2312 0.35 +0.4 97,410 + GFF2312 0.35 -0.6 97,477 - GFF2312 0.42 -0.6 97,490 + GFF2312 0.44 -1.2 97,511 - GFF2312 0.46 -0.8 97,511 - GFF2312 0.46 -0.6 97,511 - GFF2312 0.46 -0.5 97,583 + GFF2312 0.54 +0.0 97,645 + GFF2312 0.60 -0.0 97,683 + GFF2312 0.64 -1.0 97,783 - GFF2312 0.75 -0.1 97,809 - GFF2312 0.78 +0.8 97,886 + GFF2312 0.86 +3.0 98,077 + -0.5 98,077 + -0.2 98,078 - +0.2 98,078 - -0.1 98,092 + +0.5 98,135 + -0.0 98,135 + -0.3 98,136 - -1.2 98,281 - GFF2313 0.16 -0.4 98,281 - GFF2313 0.16 -0.4 98,502 + GFF2313 0.32 -0.5 98,503 - GFF2313 0.32 -1.6 98,503 - GFF2313 0.32 -1.9 98,564 - GFF2313 0.37 +1.3 98,576 - GFF2313 0.38 -0.2 98,576 - GFF2313 0.38 -0.4 98,619 + GFF2313 0.41 +0.1 98,643 + GFF2313 0.43 -0.2 98,764 - GFF2313 0.52 +0.2 98,802 + GFF2313 0.55 -1.7 98,854 + GFF2313 0.59 -0.7 99,004 + GFF2313 0.70 -0.2 99,004 + GFF2313 0.70 -0.9 99,004 + GFF2313 0.70 -0.6 99,004 + GFF2313 0.70 +0.5 99,004 + GFF2313 0.70 -1.7
Or see this region's nucleotide sequence