Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1404

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1403 and GFF1404 are separated by 131 nucleotidesGFF1404 and GFF1405 are separated by 361 nucleotides GFF1403 - Maltose/maltodextrin ABC transporter, permease protein MalF, at 47,783 to 49,327 GFF1403 GFF1404 - Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE, at 49,459 to 50,649 GFF1404 GFF1405 - Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19), at 51,011 to 52,120 GFF1405 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.557 kb on - strand, within GFF1403at 48.562 kb on + strand, within GFF1403at 48.562 kb on + strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.564 kb on + strand, within GFF1403at 48.565 kb on - strand, within GFF1403at 48.646 kb on - strand, within GFF1403at 48.746 kb on - strand, within GFF1403at 48.746 kb on - strand, within GFF1403at 48.955 kb on - strand, within GFF1403at 49.047 kb on + strand, within GFF1403at 49.051 kb on + strand, within GFF1403at 49.055 kb on - strand, within GFF1403at 49.140 kb on + strand, within GFF1403at 49.141 kb on - strand, within GFF1403at 49.162 kb on + strand, within GFF1403at 49.162 kb on + strand, within GFF1403at 49.165 kb on - strand, within GFF1403at 49.220 kb on + strandat 49.220 kb on + strandat 49.221 kb on - strandat 49.224 kb on + strandat 49.229 kb on + strandat 49.230 kb on - strandat 49.230 kb on - strandat 49.236 kb on - strandat 49.242 kb on + strandat 49.272 kb on - strandat 49.282 kb on + strandat 49.282 kb on + strandat 49.460 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.550 kb on + strandat 49.755 kb on + strand, within GFF1404at 49.847 kb on + strand, within GFF1404at 50.045 kb on + strand, within GFF1404at 50.155 kb on + strand, within GFF1404at 50.282 kb on - strand, within GFF1404at 50.282 kb on - strand, within GFF1404at 50.472 kb on + strand, within GFF1404at 50.473 kb on - strand, within GFF1404at 50.640 kb on + strandat 50.641 kb on - strandat 50.710 kb on - strandat 50.758 kb on + strandat 50.776 kb on + strandat 50.787 kb on - strandat 51.021 kb on + strandat 51.074 kb on - strandat 51.133 kb on + strand, within GFF1405at 51.151 kb on + strand, within GFF1405at 51.208 kb on + strand, within GFF1405at 51.250 kb on - strand, within GFF1405at 51.260 kb on + strand, within GFF1405at 51.261 kb on - strand, within GFF1405at 51.337 kb on - strand, within GFF1405at 51.397 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.551 kb on - strand, within GFF1405

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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48,557 - GFF1403 0.50 -0.1
48,562 + GFF1403 0.50 -0.5
48,562 + GFF1403 0.50 -0.8
48,563 - GFF1403 0.50 +0.6
48,563 - GFF1403 0.50 -0.8
48,563 - GFF1403 0.50 +0.3
48,564 + GFF1403 0.51 +0.3
48,565 - GFF1403 0.51 +1.2
48,646 - GFF1403 0.56 -0.6
48,746 - GFF1403 0.62 -0.0
48,746 - GFF1403 0.62 -0.5
48,955 - GFF1403 0.76 +1.0
49,047 + GFF1403 0.82 -0.7
49,051 + GFF1403 0.82 -0.2
49,055 - GFF1403 0.82 +0.7
49,140 + GFF1403 0.88 +1.1
49,141 - GFF1403 0.88 +0.2
49,162 + GFF1403 0.89 -0.2
49,162 + GFF1403 0.89 +0.4
49,165 - GFF1403 0.89 -0.4
49,220 + -0.0
49,220 + +0.5
49,221 - -0.2
49,224 + +0.2
49,229 + -0.6
49,230 - -0.3
49,230 - -0.3
49,236 - +0.3
49,242 + -0.0
49,272 - +0.0
49,282 + -0.3
49,282 + +1.1
49,460 + +0.1
49,464 + +0.7
49,464 + +1.2
49,550 + -0.5
49,755 + GFF1404 0.25 -1.4
49,847 + GFF1404 0.33 -1.6
50,045 + GFF1404 0.49 +1.2
50,155 + GFF1404 0.58 +0.1
50,282 - GFF1404 0.69 +0.8
50,282 - GFF1404 0.69 -0.0
50,472 + GFF1404 0.85 +1.1
50,473 - GFF1404 0.85 +1.2
50,640 + -0.2
50,641 - -0.2
50,710 - -0.5
50,758 + +0.3
50,776 + -0.9
50,787 - -0.5
51,021 + +0.5
51,074 - +0.0
51,133 + GFF1405 0.11 +0.3
51,151 + GFF1405 0.13 -0.0
51,208 + GFF1405 0.18 +0.4
51,250 - GFF1405 0.22 -0.9
51,260 + GFF1405 0.22 +0.1
51,261 - GFF1405 0.23 +1.0
51,337 - GFF1405 0.29 +0.6
51,397 + GFF1405 0.35 -0.3
51,550 + GFF1405 0.49 -2.1
51,550 + GFF1405 0.49 -0.0
51,551 - GFF1405 0.49 +1.9

Or see this region's nucleotide sequence