Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1068

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1067 and GFF1068 are separated by 57 nucleotidesGFF1068 and GFF1069 are separated by 57 nucleotides GFF1067 - Two-component response regulator CreC, at 248,274 to 249,698 GFF1067 GFF1068 - Inner membrane protein CreD, at 249,756 to 251,105 GFF1068 GFF1069 - Putative major fimbrial subunit, at 251,163 to 252,248 GFF1069 Position (kb) 249 250 251 252Strain fitness (log2 ratio) -2 -1 0 1 2at 249.054 kb on + strand, within GFF1067at 249.055 kb on - strand, within GFF1067at 249.055 kb on - strand, within GFF1067at 249.055 kb on - strand, within GFF1067at 249.163 kb on + strand, within GFF1067at 249.271 kb on + strand, within GFF1067at 249.272 kb on - strand, within GFF1067at 249.276 kb on - strand, within GFF1067at 249.446 kb on - strand, within GFF1067at 249.446 kb on - strand, within GFF1067at 249.544 kb on - strand, within GFF1067at 249.696 kb on + strandat 249.697 kb on - strandat 249.726 kb on + strandat 249.756 kb on - strandat 249.878 kb on - strandat 249.991 kb on - strand, within GFF1068at 250.002 kb on + strand, within GFF1068at 250.003 kb on - strand, within GFF1068at 250.003 kb on - strand, within GFF1068at 250.003 kb on - strand, within GFF1068at 250.069 kb on + strand, within GFF1068at 250.069 kb on + strand, within GFF1068at 250.073 kb on + strand, within GFF1068at 250.074 kb on - strand, within GFF1068at 250.182 kb on - strand, within GFF1068at 250.764 kb on + strand, within GFF1068at 250.764 kb on + strand, within GFF1068at 250.794 kb on - strand, within GFF1068at 250.855 kb on - strand, within GFF1068at 250.955 kb on + strand, within GFF1068at 250.956 kb on - strand, within GFF1068at 250.956 kb on - strand, within GFF1068at 251.089 kb on + strandat 251.165 kb on - strandat 251.168 kb on + strandat 251.168 kb on + strandat 251.170 kb on + strandat 251.170 kb on + strandat 251.170 kb on + strandat 251.171 kb on - strandat 251.171 kb on - strandat 251.171 kb on - strandat 251.171 kb on - strandat 251.182 kb on - strandat 251.267 kb on + strandat 251.403 kb on + strand, within GFF1069at 251.463 kb on - strand, within GFF1069at 251.510 kb on + strand, within GFF1069at 251.536 kb on - strand, within GFF1069at 251.664 kb on - strand, within GFF1069at 251.834 kb on + strand, within GFF1069at 251.835 kb on - strand, within GFF1069at 251.850 kb on - strand, within GFF1069at 251.854 kb on + strand, within GFF1069at 251.858 kb on + strand, within GFF1069at 251.859 kb on - strand, within GFF1069at 251.884 kb on + strand, within GFF1069at 251.991 kb on - strand, within GFF1069at 251.991 kb on - strand, within GFF1069at 252.016 kb on + strand, within GFF1069at 252.017 kb on - strand, within GFF1069at 252.018 kb on + strand, within GFF1069at 252.019 kb on - strand, within GFF1069at 252.019 kb on - strand, within GFF1069at 252.032 kb on + strand, within GFF1069at 252.032 kb on + strand, within GFF1069at 252.044 kb on + strand, within GFF1069

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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249,054 + GFF1067 0.55 +0.2
249,055 - GFF1067 0.55 +0.1
249,055 - GFF1067 0.55 +0.1
249,055 - GFF1067 0.55 -0.1
249,163 + GFF1067 0.62 -0.6
249,271 + GFF1067 0.70 -0.4
249,272 - GFF1067 0.70 +0.5
249,276 - GFF1067 0.70 +0.6
249,446 - GFF1067 0.82 -0.3
249,446 - GFF1067 0.82 +0.3
249,544 - GFF1067 0.89 -1.0
249,696 + +0.3
249,697 - +0.1
249,726 + +0.1
249,756 - +0.1
249,878 - -0.4
249,991 - GFF1068 0.17 -0.5
250,002 + GFF1068 0.18 +0.5
250,003 - GFF1068 0.18 -0.2
250,003 - GFF1068 0.18 -0.2
250,003 - GFF1068 0.18 -1.8
250,069 + GFF1068 0.23 -0.2
250,069 + GFF1068 0.23 -0.3
250,073 + GFF1068 0.23 -0.0
250,074 - GFF1068 0.24 -0.4
250,182 - GFF1068 0.32 -0.0
250,764 + GFF1068 0.75 -1.2
250,764 + GFF1068 0.75 -0.7
250,794 - GFF1068 0.77 -0.7
250,855 - GFF1068 0.81 +0.2
250,955 + GFF1068 0.89 -1.1
250,956 - GFF1068 0.89 -0.8
250,956 - GFF1068 0.89 -0.7
251,089 + +0.7
251,165 - -0.1
251,168 + +0.2
251,168 + -0.5
251,170 + -1.9
251,170 + -0.1
251,170 + +0.0
251,171 - +0.6
251,171 - +1.8
251,171 - -0.5
251,171 - -0.5
251,182 - -1.1
251,267 + +0.3
251,403 + GFF1069 0.22 +0.5
251,463 - GFF1069 0.28 -0.8
251,510 + GFF1069 0.32 -0.1
251,536 - GFF1069 0.34 -0.1
251,664 - GFF1069 0.46 -1.0
251,834 + GFF1069 0.62 -0.6
251,835 - GFF1069 0.62 -0.6
251,850 - GFF1069 0.63 +0.6
251,854 + GFF1069 0.64 -1.5
251,858 + GFF1069 0.64 +0.6
251,859 - GFF1069 0.64 -0.6
251,884 + GFF1069 0.66 -0.4
251,991 - GFF1069 0.76 +0.1
251,991 - GFF1069 0.76 -1.0
252,016 + GFF1069 0.79 -0.4
252,017 - GFF1069 0.79 +0.1
252,018 + GFF1069 0.79 -0.3
252,019 - GFF1069 0.79 -0.2
252,019 - GFF1069 0.79 +0.9
252,032 + GFF1069 0.80 -0.5
252,032 + GFF1069 0.80 +0.4
252,044 + GFF1069 0.81 -0.5

Or see this region's nucleotide sequence