Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0752 and Atu0753 are separated by 180 nucleotides Atu0753 and Atu0754 are separated by 12 nucleotides
Atu0752: Atu0752 - hypothetical protein, at 749,139 to 750,335
Atu0752
Atu0753: Atu0753 - 3,4-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II, at 750,516 to 751,616
Atu0753
Atu0754: Atu0754 - chorismate synthase, at 751,629 to 752,726
Atu0754
Position (kb) 750
751
752 Strain fitness (log2 ratio) -1
0
1
2 at 749.580 kb on + strand, within Atu0752 at 749.616 kb on + strand, within Atu0752 at 749.618 kb on + strand, within Atu0752 at 749.626 kb on - strand, within Atu0752 at 749.699 kb on - strand, within Atu0752 at 749.719 kb on - strand, within Atu0752 at 749.773 kb on + strand, within Atu0752 at 749.853 kb on + strand, within Atu0752 at 749.942 kb on - strand, within Atu0752 at 749.963 kb on + strand, within Atu0752 at 750.000 kb on + strand, within Atu0752 at 750.018 kb on + strand, within Atu0752 at 750.018 kb on - strand, within Atu0752 at 750.132 kb on - strand, within Atu0752 at 750.179 kb on + strand, within Atu0752 at 750.214 kb on + strand, within Atu0752 at 750.214 kb on + strand, within Atu0752 at 750.266 kb on + strand at 750.281 kb on + strand at 750.281 kb on + strand at 750.286 kb on + strand at 750.289 kb on - strand at 750.336 kb on + strand at 750.367 kb on - strand at 750.449 kb on + strand at 750.497 kb on + strand at 750.508 kb on + strand at 750.562 kb on - strand at 750.591 kb on - strand at 750.617 kb on + strand at 750.901 kb on + strand, within Atu0753 at 750.929 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.944 kb on - strand, within Atu0753 at 751.174 kb on + strand, within Atu0753 at 751.192 kb on - strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.297 kb on - strand, within Atu0753 at 751.396 kb on + strand, within Atu0753 at 751.464 kb on - strand, within Atu0753 at 751.545 kb on + strand at 751.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 749,580 + Atu0752 0.37 +0.2 749,616 + Atu0752 0.40 +1.1 749,618 + Atu0752 0.40 -0.6 749,626 - Atu0752 0.41 +1.4 749,699 - Atu0752 0.47 -1.3 749,719 - Atu0752 0.48 +0.3 749,773 + Atu0752 0.53 +1.0 749,853 + Atu0752 0.60 -1.6 749,942 - Atu0752 0.67 +0.8 749,963 + Atu0752 0.69 +0.4 750,000 + Atu0752 0.72 -0.0 750,018 + Atu0752 0.73 -0.4 750,018 - Atu0752 0.73 +0.3 750,132 - Atu0752 0.83 -0.1 750,179 + Atu0752 0.87 -0.4 750,214 + Atu0752 0.90 -0.6 750,214 + Atu0752 0.90 -1.6 750,266 + +1.4 750,281 + -0.6 750,281 + +0.4 750,286 + +0.4 750,289 - +0.3 750,336 + -1.4 750,367 - +1.3 750,449 + +0.9 750,497 + +0.7 750,508 + +1.0 750,562 - +0.5 750,591 - +0.9 750,617 + -0.5 750,901 + Atu0753 0.35 -0.2 750,929 + Atu0753 0.38 -0.5 750,931 + Atu0753 0.38 +0.4 750,931 + Atu0753 0.38 +0.4 750,939 - Atu0753 0.38 -0.7 750,939 - Atu0753 0.38 -1.2 750,944 - Atu0753 0.39 +0.6 751,174 + Atu0753 0.60 -0.1 751,192 - Atu0753 0.61 +0.4 751,289 + Atu0753 0.70 +1.4 751,289 + Atu0753 0.70 +1.9 751,289 + Atu0753 0.70 +0.5 751,297 - Atu0753 0.71 +1.1 751,396 + Atu0753 0.80 -1.1 751,464 - Atu0753 0.86 -0.2 751,545 + -1.4 751,613 - -0.2
Or see this region's nucleotide sequence