Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4745 and GFF4746 are separated by 26 nucleotides GFF4746 and GFF4747 are separated by 79 nucleotides GFF4747 and GFF4748 are separated by 18 nucleotides GFF4748 and GFF4749 are separated by 63 nucleotides
GFF4745 - secretion chaparone, at 53,472 to 53,864
GFF4745
GFF4746 - doubtful CDS found within S. typhi pathogenicity island, at 53,891 to 54,115
GFF4746
GFF4747 - Acyl carrier protein, at 54,195 to 54,443
GFF4747
GFF4748 - Type III secretion injected virulence protein (YopE), at 54,462 to 56,474
GFF4748
GFF4749 - Type III secretion host injection protein (YopB), at 56,538 to 57,473
GFF4749
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.709 kb on - strand, within GFF4745 at 54.377 kb on + strand, within GFF4747 at 54.378 kb on - strand, within GFF4747 at 54.535 kb on + strand at 54.587 kb on + strand at 54.615 kb on + strand at 54.690 kb on - strand, within GFF4748 at 54.866 kb on + strand, within GFF4748 at 54.866 kb on + strand, within GFF4748 at 54.867 kb on - strand, within GFF4748 at 54.870 kb on + strand, within GFF4748 at 54.870 kb on + strand, within GFF4748 at 54.918 kb on - strand, within GFF4748 at 55.004 kb on + strand, within GFF4748 at 55.059 kb on + strand, within GFF4748 at 55.073 kb on + strand, within GFF4748 at 55.431 kb on - strand, within GFF4748 at 55.493 kb on + strand, within GFF4748 at 55.530 kb on - strand, within GFF4748 at 55.530 kb on - strand, within GFF4748 at 55.584 kb on - strand, within GFF4748 at 55.683 kb on + strand, within GFF4748 at 55.728 kb on - strand, within GFF4748 at 55.759 kb on - strand, within GFF4748 at 55.771 kb on - strand, within GFF4748 at 55.850 kb on + strand, within GFF4748 at 55.850 kb on + strand, within GFF4748 at 55.850 kb on + strand, within GFF4748 at 55.924 kb on - strand, within GFF4748 at 55.941 kb on - strand, within GFF4748 at 55.964 kb on - strand, within GFF4748 at 56.319 kb on - strand at 56.514 kb on - strand at 56.521 kb on - strand at 56.523 kb on + strand at 56.787 kb on + strand, within GFF4749 at 57.036 kb on + strand, within GFF4749 at 57.037 kb on - strand, within GFF4749 at 57.125 kb on - strand, within GFF4749 at 57.144 kb on + strand, within GFF4749 at 57.146 kb on + strand, within GFF4749 at 57.222 kb on + strand, within GFF4749
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 53,709 - GFF4745 0.60 -0.3 54,377 + GFF4747 0.73 +0.9 54,378 - GFF4747 0.73 -3.0 54,535 + -0.1 54,587 + +0.2 54,615 + -0.1 54,690 - GFF4748 0.11 +0.1 54,866 + GFF4748 0.20 -1.2 54,866 + GFF4748 0.20 +0.4 54,867 - GFF4748 0.20 +0.0 54,870 + GFF4748 0.20 -0.1 54,870 + GFF4748 0.20 +1.8 54,918 - GFF4748 0.23 -0.5 55,004 + GFF4748 0.27 +0.5 55,059 + GFF4748 0.30 +0.2 55,073 + GFF4748 0.30 +0.6 55,431 - GFF4748 0.48 +1.0 55,493 + GFF4748 0.51 -0.3 55,530 - GFF4748 0.53 -0.5 55,530 - GFF4748 0.53 +0.9 55,584 - GFF4748 0.56 -0.1 55,683 + GFF4748 0.61 -0.0 55,728 - GFF4748 0.63 -0.2 55,759 - GFF4748 0.64 +1.4 55,771 - GFF4748 0.65 +0.1 55,850 + GFF4748 0.69 -0.5 55,850 + GFF4748 0.69 +0.4 55,850 + GFF4748 0.69 -0.4 55,924 - GFF4748 0.73 -0.0 55,941 - GFF4748 0.73 +0.4 55,964 - GFF4748 0.75 -1.0 56,319 - -0.4 56,514 - +0.3 56,521 - -0.1 56,523 + -0.4 56,787 + GFF4749 0.27 +0.8 57,036 + GFF4749 0.53 -0.4 57,037 - GFF4749 0.53 -1.2 57,125 - GFF4749 0.63 +0.0 57,144 + GFF4749 0.65 -0.3 57,146 + GFF4749 0.65 +0.6 57,222 + GFF4749 0.73 +0.0
Or see this region's nucleotide sequence