Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4177

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4176 and GFF4177 are separated by 9 nucleotidesGFF4177 and GFF4178 are separated by 57 nucleotidesGFF4178 and GFF4179 overlap by 40 nucleotides GFF4176 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 64,952 to 66,022 GFF4176 GFF4177 - Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43), at 66,032 to 67,153 GFF4177 GFF4178 - FIG074102: hypothetical protein, at 67,211 to 68,119 GFF4178 GFF4179 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 68,080 to 69,240 GFF4179 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1at 65.062 kb on - strand, within GFF4176at 65.124 kb on + strand, within GFF4176at 65.124 kb on + strand, within GFF4176at 65.168 kb on + strand, within GFF4176at 65.169 kb on - strand, within GFF4176at 65.216 kb on + strand, within GFF4176at 65.676 kb on - strand, within GFF4176at 65.676 kb on - strand, within GFF4176at 65.728 kb on - strand, within GFF4176at 65.745 kb on + strand, within GFF4176at 65.745 kb on + strand, within GFF4176at 65.821 kb on + strand, within GFF4176at 65.863 kb on + strand, within GFF4176at 65.863 kb on + strand, within GFF4176at 65.863 kb on + strand, within GFF4176at 65.944 kb on + strandat 65.945 kb on - strandat 65.971 kb on - strandat 66.066 kb on + strandat 66.187 kb on + strand, within GFF4177at 66.188 kb on - strand, within GFF4177at 66.188 kb on - strand, within GFF4177at 66.278 kb on + strand, within GFF4177at 66.539 kb on - strand, within GFF4177at 66.938 kb on + strand, within GFF4177at 66.939 kb on - strand, within GFF4177at 66.939 kb on - strand, within GFF4177at 66.949 kb on + strand, within GFF4177at 66.950 kb on - strand, within GFF4177at 66.952 kb on + strand, within GFF4177at 66.992 kb on + strand, within GFF4177at 66.992 kb on + strand, within GFF4177at 66.992 kb on + strand, within GFF4177at 67.165 kb on - strandat 67.167 kb on - strandat 67.167 kb on - strandat 67.170 kb on - strandat 67.216 kb on + strandat 67.230 kb on + strandat 67.292 kb on + strandat 67.351 kb on + strand, within GFF4178at 67.352 kb on - strand, within GFF4178at 67.432 kb on + strand, within GFF4178at 67.432 kb on + strand, within GFF4178at 67.447 kb on + strand, within GFF4178at 67.458 kb on + strand, within GFF4178at 67.492 kb on + strand, within GFF4178at 67.574 kb on + strand, within GFF4178at 67.575 kb on - strand, within GFF4178at 67.686 kb on - strand, within GFF4178at 67.686 kb on - strand, within GFF4178at 67.686 kb on - strand, within GFF4178at 67.687 kb on + strand, within GFF4178at 67.713 kb on + strand, within GFF4178at 67.715 kb on + strand, within GFF4178at 67.715 kb on + strand, within GFF4178at 67.716 kb on - strand, within GFF4178at 67.716 kb on - strand, within GFF4178at 67.826 kb on + strand, within GFF4178at 67.960 kb on + strand, within GFF4178at 67.969 kb on + strand, within GFF4178at 67.969 kb on + strand, within GFF4178

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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65,062 - GFF4176 0.10 -0.1
65,124 + GFF4176 0.16 -0.6
65,124 + GFF4176 0.16 +0.6
65,168 + GFF4176 0.20 +1.1
65,169 - GFF4176 0.20 -0.5
65,216 + GFF4176 0.25 -1.4
65,676 - GFF4176 0.68 +1.6
65,676 - GFF4176 0.68 -0.4
65,728 - GFF4176 0.72 +0.5
65,745 + GFF4176 0.74 -0.5
65,745 + GFF4176 0.74 -0.2
65,821 + GFF4176 0.81 +0.3
65,863 + GFF4176 0.85 -0.5
65,863 + GFF4176 0.85 +0.1
65,863 + GFF4176 0.85 +0.3
65,944 + +0.8
65,945 - +0.6
65,971 - +1.3
66,066 + +1.2
66,187 + GFF4177 0.14 -0.1
66,188 - GFF4177 0.14 -0.2
66,188 - GFF4177 0.14 -1.3
66,278 + GFF4177 0.22 +0.2
66,539 - GFF4177 0.45 -0.3
66,938 + GFF4177 0.81 +0.8
66,939 - GFF4177 0.81 +1.0
66,939 - GFF4177 0.81 +0.5
66,949 + GFF4177 0.82 +0.2
66,950 - GFF4177 0.82 +1.1
66,952 + GFF4177 0.82 -0.3
66,992 + GFF4177 0.86 +0.2
66,992 + GFF4177 0.86 -0.0
66,992 + GFF4177 0.86 -0.2
67,165 - -1.1
67,167 - +0.0
67,167 - +0.8
67,170 - +0.4
67,216 + -0.4
67,230 + +0.3
67,292 + +0.8
67,351 + GFF4178 0.15 +0.6
67,352 - GFF4178 0.16 +0.4
67,432 + GFF4178 0.24 +0.2
67,432 + GFF4178 0.24 +0.2
67,447 + GFF4178 0.26 -0.1
67,458 + GFF4178 0.27 -0.5
67,492 + GFF4178 0.31 +0.2
67,574 + GFF4178 0.40 +0.6
67,575 - GFF4178 0.40 -0.1
67,686 - GFF4178 0.52 -0.4
67,686 - GFF4178 0.52 -0.1
67,686 - GFF4178 0.52 -0.2
67,687 + GFF4178 0.52 +1.4
67,713 + GFF4178 0.55 +0.8
67,715 + GFF4178 0.55 -0.2
67,715 + GFF4178 0.55 -1.0
67,716 - GFF4178 0.56 +0.1
67,716 - GFF4178 0.56 -0.6
67,826 + GFF4178 0.68 +0.0
67,960 + GFF4178 0.82 +0.1
67,969 + GFF4178 0.83 +0.1
67,969 + GFF4178 0.83 -0.4

Or see this region's nucleotide sequence