Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3508 and GFF3509 are separated by 364 nucleotides GFF3509 and GFF3510 are separated by 101 nucleotides
GFF3508 - Catalase (EC 1.11.1.6), at 259,167 to 261,419
GFF3508
GFF3509 - Cell division activator cedA, at 261,784 to 262,026
GFF3509
GFF3510 - L-cystine uptake protein TcyP, at 262,128 to 263,519
GFF3510
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 260.893 kb on - strand, within GFF3508 at 261.005 kb on + strand, within GFF3508 at 261.006 kb on - strand, within GFF3508 at 261.006 kb on - strand, within GFF3508 at 261.007 kb on + strand, within GFF3508 at 261.008 kb on - strand, within GFF3508 at 261.122 kb on + strand, within GFF3508 at 261.410 kb on + strand at 261.500 kb on + strand at 261.532 kb on + strand at 261.535 kb on - strand at 261.535 kb on - strand at 261.819 kb on + strand, within GFF3509 at 261.822 kb on + strand, within GFF3509 at 261.826 kb on + strand, within GFF3509 at 261.826 kb on + strand, within GFF3509 at 261.827 kb on - strand, within GFF3509 at 261.828 kb on + strand, within GFF3509 at 261.828 kb on + strand, within GFF3509 at 261.907 kb on - strand, within GFF3509 at 261.910 kb on + strand, within GFF3509 at 261.911 kb on - strand, within GFF3509 at 261.961 kb on - strand, within GFF3509 at 262.127 kb on - strand at 262.129 kb on + strand at 262.175 kb on + strand at 262.575 kb on - strand, within GFF3510 at 262.678 kb on - strand, within GFF3510 at 262.681 kb on - strand, within GFF3510 at 262.717 kb on + strand, within GFF3510 at 262.718 kb on - strand, within GFF3510 at 262.749 kb on - strand, within GFF3510 at 262.749 kb on - strand, within GFF3510 at 262.812 kb on - strand, within GFF3510 at 262.967 kb on + strand, within GFF3510
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 260,893 - GFF3508 0.77 -0.8 261,005 + GFF3508 0.82 -0.4 261,006 - GFF3508 0.82 -0.0 261,006 - GFF3508 0.82 -1.3 261,007 + GFF3508 0.82 +0.8 261,008 - GFF3508 0.82 -2.2 261,122 + GFF3508 0.87 -2.0 261,410 + -1.0 261,500 + -0.4 261,532 + +0.5 261,535 - -0.8 261,535 - -1.1 261,819 + GFF3509 0.14 +0.4 261,822 + GFF3509 0.16 -0.1 261,826 + GFF3509 0.17 -0.1 261,826 + GFF3509 0.17 -0.9 261,827 - GFF3509 0.18 -1.0 261,828 + GFF3509 0.18 +0.0 261,828 + GFF3509 0.18 -0.6 261,907 - GFF3509 0.51 +0.0 261,910 + GFF3509 0.52 -0.2 261,911 - GFF3509 0.52 -2.1 261,961 - GFF3509 0.73 -0.9 262,127 - +1.1 262,129 + +1.5 262,175 + -0.6 262,575 - GFF3510 0.32 +0.3 262,678 - GFF3510 0.40 +0.8 262,681 - GFF3510 0.40 -1.0 262,717 + GFF3510 0.42 -0.2 262,718 - GFF3510 0.42 +0.3 262,749 - GFF3510 0.45 +0.6 262,749 - GFF3510 0.45 -0.4 262,812 - GFF3510 0.49 -0.2 262,967 + GFF3510 0.60 -0.9
Or see this region's nucleotide sequence