Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2506 and GFF2507 are separated by 19 nucleotides GFF2507 and GFF2508 are separated by 315 nucleotides GFF2508 and GFF2509 are separated by 46 nucleotides
GFF2506 - Multiple antibiotic resistance protein MarA, at 22,711 to 23,094
GFF2506
GFF2507 - Multiple antibiotic resistance protein MarR, at 23,114 to 23,491
GFF2507
GFF2508 - Multiple antibiotic resistance protein MarC, at 23,807 to 24,472
GFF2508
GFF2509 - Sugar efflux transporter SotB, at 24,519 to 25,709
GFF2509
Position (kb)
23
24
25 Strain fitness (log2 ratio)
-2
-1
0
1 at 22.844 kb on + strand, within GFF2506 at 22.845 kb on - strand, within GFF2506 at 22.925 kb on + strand, within GFF2506 at 23.064 kb on + strand at 23.064 kb on + strand at 23.065 kb on - strand at 23.065 kb on - strand at 23.065 kb on - strand at 23.071 kb on - strand at 23.116 kb on - strand at 23.116 kb on - strand at 23.139 kb on + strand at 23.180 kb on + strand, within GFF2507 at 23.387 kb on - strand, within GFF2507 at 23.387 kb on - strand, within GFF2507 at 23.387 kb on - strand, within GFF2507 at 23.387 kb on - strand, within GFF2507 at 23.659 kb on - strand at 23.793 kb on + strand at 23.800 kb on + strand at 23.803 kb on + strand at 23.803 kb on + strand at 23.806 kb on + strand at 23.940 kb on - strand, within GFF2508 at 23.942 kb on - strand, within GFF2508 at 23.969 kb on - strand, within GFF2508 at 24.181 kb on + strand, within GFF2508 at 24.349 kb on + strand, within GFF2508 at 24.470 kb on + strand at 24.609 kb on - strand at 24.610 kb on + strand at 24.650 kb on + strand, within GFF2509 at 24.650 kb on + strand, within GFF2509 at 24.902 kb on + strand, within GFF2509 at 25.018 kb on + strand, within GFF2509 at 25.018 kb on + strand, within GFF2509 at 25.018 kb on + strand, within GFF2509 at 25.018 kb on + strand, within GFF2509 at 25.022 kb on + strand, within GFF2509 at 25.022 kb on + strand, within GFF2509 at 25.022 kb on + strand, within GFF2509 at 25.023 kb on - strand, within GFF2509 at 25.024 kb on + strand, within GFF2509 at 25.025 kb on - strand, within GFF2509 at 25.067 kb on - strand, within GFF2509 at 25.067 kb on - strand, within GFF2509 at 25.146 kb on + strand, within GFF2509 at 25.165 kb on - strand, within GFF2509 at 25.165 kb on - strand, within GFF2509 at 25.165 kb on - strand, within GFF2509 at 25.172 kb on + strand, within GFF2509 at 25.172 kb on + strand, within GFF2509 at 25.243 kb on - strand, within GFF2509 at 25.293 kb on + strand, within GFF2509 at 25.293 kb on + strand, within GFF2509 at 25.294 kb on - strand, within GFF2509
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 22,844 + GFF2506 0.35 -2.1 22,845 - GFF2506 0.35 -2.7 22,925 + GFF2506 0.56 -1.6 23,064 + +1.1 23,064 + +0.1 23,065 - -0.1 23,065 - +0.4 23,065 - -0.3 23,071 - +0.1 23,116 - +1.5 23,116 - -0.1 23,139 + +0.0 23,180 + GFF2507 0.17 +0.5 23,387 - GFF2507 0.72 +0.3 23,387 - GFF2507 0.72 +0.4 23,387 - GFF2507 0.72 -1.0 23,387 - GFF2507 0.72 -0.6 23,659 - -0.2 23,793 + +0.3 23,800 + +0.2 23,803 + +0.1 23,803 + -1.0 23,806 + -1.9 23,940 - GFF2508 0.20 -0.3 23,942 - GFF2508 0.20 +0.3 23,969 - GFF2508 0.24 -0.8 24,181 + GFF2508 0.56 -1.5 24,349 + GFF2508 0.81 -0.3 24,470 + +0.2 24,609 - -0.1 24,610 + -1.4 24,650 + GFF2509 0.11 +0.7 24,650 + GFF2509 0.11 -0.3 24,902 + GFF2509 0.32 -0.6 25,018 + GFF2509 0.42 +0.6 25,018 + GFF2509 0.42 +0.2 25,018 + GFF2509 0.42 -0.1 25,018 + GFF2509 0.42 -0.0 25,022 + GFF2509 0.42 -2.5 25,022 + GFF2509 0.42 +0.6 25,022 + GFF2509 0.42 -0.1 25,023 - GFF2509 0.42 -0.3 25,024 + GFF2509 0.42 +0.1 25,025 - GFF2509 0.42 -1.0 25,067 - GFF2509 0.46 -0.2 25,067 - GFF2509 0.46 -2.4 25,146 + GFF2509 0.53 -2.4 25,165 - GFF2509 0.54 +0.2 25,165 - GFF2509 0.54 +0.0 25,165 - GFF2509 0.54 -0.8 25,172 + GFF2509 0.55 -0.3 25,172 + GFF2509 0.55 -0.8 25,243 - GFF2509 0.61 -0.4 25,293 + GFF2509 0.65 +0.2 25,293 + GFF2509 0.65 +0.7 25,294 - GFF2509 0.65 +0.2
Or see this region's nucleotide sequence