Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2307

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2306 and GFF2307 are separated by 111 nucleotidesGFF2307 and GFF2308 are separated by 20 nucleotides GFF2306 - Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11), at 92,144 to 93,154 GFF2306 GFF2307 - Glycerol kinase (EC 2.7.1.30), at 93,266 to 94,774 GFF2307 GFF2308 - Glycerol uptake facilitator protein, at 94,795 to 95,640 GFF2308 Position (kb) 93 94 95Strain fitness (log2 ratio) -1 0 1at 92.320 kb on + strand, within GFF2306at 92.320 kb on + strand, within GFF2306at 92.567 kb on - strand, within GFF2306at 92.567 kb on - strand, within GFF2306at 92.798 kb on - strand, within GFF2306at 92.799 kb on + strand, within GFF2306at 92.799 kb on + strand, within GFF2306at 92.799 kb on + strand, within GFF2306at 92.800 kb on - strand, within GFF2306at 92.800 kb on - strand, within GFF2306at 92.800 kb on - strand, within GFF2306at 92.831 kb on - strand, within GFF2306at 92.955 kb on + strand, within GFF2306at 92.955 kb on + strand, within GFF2306at 93.031 kb on + strand, within GFF2306at 93.031 kb on + strand, within GFF2306at 93.032 kb on - strand, within GFF2306at 93.190 kb on + strandat 93.191 kb on - strandat 93.191 kb on - strandat 93.267 kb on + strandat 93.267 kb on + strandat 93.267 kb on + strandat 93.268 kb on - strandat 93.330 kb on + strandat 93.331 kb on - strandat 93.335 kb on - strandat 93.757 kb on + strand, within GFF2307at 93.757 kb on + strand, within GFF2307at 93.758 kb on - strand, within GFF2307at 93.873 kb on + strand, within GFF2307at 93.978 kb on + strand, within GFF2307at 94.063 kb on + strand, within GFF2307at 94.063 kb on + strand, within GFF2307at 94.063 kb on + strand, within GFF2307at 94.063 kb on + strand, within GFF2307at 94.063 kb on + strand, within GFF2307at 94.064 kb on - strand, within GFF2307at 94.064 kb on - strand, within GFF2307at 94.069 kb on + strand, within GFF2307at 94.078 kb on + strand, within GFF2307at 94.117 kb on + strand, within GFF2307at 94.117 kb on + strand, within GFF2307at 94.117 kb on + strand, within GFF2307at 94.118 kb on - strand, within GFF2307at 94.118 kb on - strand, within GFF2307at 94.121 kb on + strand, within GFF2307at 94.122 kb on - strand, within GFF2307at 94.168 kb on + strand, within GFF2307at 94.169 kb on - strand, within GFF2307at 94.224 kb on + strand, within GFF2307at 94.264 kb on + strand, within GFF2307at 94.273 kb on + strand, within GFF2307at 94.354 kb on + strand, within GFF2307at 94.405 kb on - strand, within GFF2307at 94.405 kb on - strand, within GFF2307at 94.471 kb on + strand, within GFF2307at 94.472 kb on - strand, within GFF2307at 94.480 kb on - strand, within GFF2307at 94.637 kb on + strandat 94.757 kb on - strandat 94.946 kb on + strand, within GFF2308at 95.229 kb on - strand, within GFF2308at 95.229 kb on - strand, within GFF2308at 95.280 kb on + strand, within GFF2308at 95.373 kb on + strand, within GFF2308at 95.472 kb on - strand, within GFF2308at 95.476 kb on - strand, within GFF2308at 95.530 kb on - strand, within GFF2308at 95.620 kb on + strandat 95.620 kb on + strandat 95.659 kb on - strandat 95.662 kb on + strandat 95.662 kb on + strandat 95.663 kb on - strandat 95.663 kb on - strandat 95.722 kb on + strandat 95.773 kb on + strandat 95.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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92,320 + GFF2306 0.17 -0.1
92,320 + GFF2306 0.17 -0.6
92,567 - GFF2306 0.42 +0.5
92,567 - GFF2306 0.42 +0.3
92,798 - GFF2306 0.65 +0.2
92,799 + GFF2306 0.65 -0.3
92,799 + GFF2306 0.65 -0.1
92,799 + GFF2306 0.65 +0.0
92,800 - GFF2306 0.65 +0.2
92,800 - GFF2306 0.65 +0.5
92,800 - GFF2306 0.65 -0.9
92,831 - GFF2306 0.68 +0.2
92,955 + GFF2306 0.80 -0.2
92,955 + GFF2306 0.80 -0.2
93,031 + GFF2306 0.88 +0.2
93,031 + GFF2306 0.88 +0.1
93,032 - GFF2306 0.88 -1.1
93,190 + +0.6
93,191 - +0.1
93,191 - +0.4
93,267 + +1.2
93,267 + -1.2
93,267 + +0.2
93,268 - +0.3
93,330 + +0.3
93,331 - +0.6
93,335 - +0.5
93,757 + GFF2307 0.33 +0.3
93,757 + GFF2307 0.33 +0.6
93,758 - GFF2307 0.33 +0.8
93,873 + GFF2307 0.40 +0.5
93,978 + GFF2307 0.47 -0.2
94,063 + GFF2307 0.53 +0.5
94,063 + GFF2307 0.53 +1.5
94,063 + GFF2307 0.53 +0.2
94,063 + GFF2307 0.53 +0.8
94,063 + GFF2307 0.53 +0.1
94,064 - GFF2307 0.53 +0.0
94,064 - GFF2307 0.53 -0.4
94,069 + GFF2307 0.53 +1.2
94,078 + GFF2307 0.54 +1.3
94,117 + GFF2307 0.56 +0.5
94,117 + GFF2307 0.56 +0.2
94,117 + GFF2307 0.56 +0.2
94,118 - GFF2307 0.56 +0.0
94,118 - GFF2307 0.56 +0.1
94,121 + GFF2307 0.57 +0.7
94,122 - GFF2307 0.57 +0.8
94,168 + GFF2307 0.60 +0.2
94,169 - GFF2307 0.60 +0.7
94,224 + GFF2307 0.63 -0.3
94,264 + GFF2307 0.66 +0.2
94,273 + GFF2307 0.67 +0.6
94,354 + GFF2307 0.72 -0.1
94,405 - GFF2307 0.75 +0.5
94,405 - GFF2307 0.75 +0.2
94,471 + GFF2307 0.80 -0.2
94,472 - GFF2307 0.80 +0.6
94,480 - GFF2307 0.80 +0.9
94,637 + +0.8
94,757 - +0.1
94,946 + GFF2308 0.18 +0.6
95,229 - GFF2308 0.51 +0.1
95,229 - GFF2308 0.51 +0.2
95,280 + GFF2308 0.57 +0.1
95,373 + GFF2308 0.68 +0.4
95,472 - GFF2308 0.80 +0.6
95,476 - GFF2308 0.80 +0.4
95,530 - GFF2308 0.87 +0.5
95,620 + +1.0
95,620 + +0.7
95,659 - -0.2
95,662 + -0.9
95,662 + +0.6
95,663 - +0.4
95,663 - +0.4
95,722 + +0.8
95,773 + -0.1
95,774 - +0.3

Or see this region's nucleotide sequence