Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF198 and GFF199 are separated by 293 nucleotides GFF199 and GFF200 are separated by 88 nucleotides GFF200 and GFF201 are separated by 80 nucleotides GFF201 and GFF202 overlap by 4 nucleotides
GFF198 - Probable secreted protein, at 194,543 to 194,959
GFF198
GFF199 - probable lipoprotein, at 195,253 to 195,483
GFF199
GFF200 - Putative metabolite transport protein yaaU, at 195,572 to 196,978
GFF200
GFF201 - Ferredoxin-like protein FixX, at 197,059 to 197,346
GFF201
GFF202 - Probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-), at 197,343 to 198,629
GFF202
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 194.653 kb on - strand, within GFF198 at 194.663 kb on - strand, within GFF198 at 194.743 kb on - strand, within GFF198 at 194.841 kb on + strand, within GFF198 at 194.997 kb on + strand at 195.139 kb on - strand at 195.236 kb on - strand at 195.382 kb on - strand, within GFF199 at 195.439 kb on + strand, within GFF199 at 195.532 kb on - strand at 195.627 kb on - strand at 195.977 kb on - strand, within GFF200 at 195.997 kb on + strand, within GFF200 at 196.124 kb on - strand, within GFF200 at 196.125 kb on + strand, within GFF200 at 196.126 kb on - strand, within GFF200 at 196.543 kb on - strand, within GFF200 at 196.556 kb on - strand, within GFF200 at 196.883 kb on - strand at 197.057 kb on + strand at 197.204 kb on + strand, within GFF201 at 197.349 kb on + strand at 197.708 kb on + strand, within GFF202 at 197.740 kb on - strand, within GFF202 at 197.769 kb on - strand, within GFF202 at 197.769 kb on - strand, within GFF202 at 197.769 kb on - strand, within GFF202 at 197.804 kb on - strand, within GFF202
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 194,653 - GFF198 0.26 -0.6 194,663 - GFF198 0.29 +0.6 194,743 - GFF198 0.48 -1.1 194,841 + GFF198 0.71 -0.2 194,997 + -0.3 195,139 - +0.2 195,236 - +0.4 195,382 - GFF199 0.56 -0.1 195,439 + GFF199 0.81 +0.4 195,532 - +0.0 195,627 - -2.8 195,977 - GFF200 0.29 -0.1 195,997 + GFF200 0.30 -0.5 196,124 - GFF200 0.39 +0.1 196,125 + GFF200 0.39 -1.2 196,126 - GFF200 0.39 -0.0 196,543 - GFF200 0.69 -2.2 196,556 - GFF200 0.70 +0.3 196,883 - +1.2 197,057 + -0.4 197,204 + GFF201 0.50 +0.1 197,349 + -0.3 197,708 + GFF202 0.28 -0.8 197,740 - GFF202 0.31 -0.1 197,769 - GFF202 0.33 +0.3 197,769 - GFF202 0.33 -0.2 197,769 - GFF202 0.33 -0.6 197,804 - GFF202 0.36 +0.4
Or see this region's nucleotide sequence