Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1382

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1381 and GFF1382 overlap by 13 nucleotidesGFF1382 and GFF1383 overlap by 1 nucleotidesGFF1383 and GFF1384 overlap by 1 nucleotides GFF1381 - Gene D protein, at 28,469 to 29,512 GFF1381 GFF1382 - Putative inner membrane protein, at 29,500 to 29,709 GFF1382 GFF1383 - FIG00639790: hypothetical protein, at 29,709 to 30,662 GFF1383 GFF1384 - Phage tail length tape-measure protein, at 30,662 to 33,016 GFF1384 Position (kb) 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1at 28.595 kb on + strand, within GFF1381at 28.596 kb on - strand, within GFF1381at 28.864 kb on + strand, within GFF1381at 28.865 kb on - strand, within GFF1381at 28.879 kb on - strand, within GFF1381at 28.980 kb on + strand, within GFF1381at 28.981 kb on - strand, within GFF1381at 28.981 kb on - strand, within GFF1381at 29.126 kb on - strand, within GFF1381at 29.241 kb on + strand, within GFF1381at 29.381 kb on - strand, within GFF1381at 29.384 kb on - strand, within GFF1381at 29.413 kb on - strandat 29.413 kb on - strandat 29.427 kb on + strandat 29.441 kb on - strandat 29.501 kb on + strandat 29.547 kb on + strand, within GFF1382at 29.703 kb on - strandat 29.724 kb on - strandat 30.162 kb on - strand, within GFF1383at 30.584 kb on - strandat 30.600 kb on - strandat 30.663 kb on + strandat 30.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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28,595 + GFF1381 0.12 -0.1
28,596 - GFF1381 0.12 -0.2
28,864 + GFF1381 0.38 -2.8
28,865 - GFF1381 0.38 +0.3
28,879 - GFF1381 0.39 +0.1
28,980 + GFF1381 0.49 +0.1
28,981 - GFF1381 0.49 +0.5
28,981 - GFF1381 0.49 -0.1
29,126 - GFF1381 0.63 -0.7
29,241 + GFF1381 0.74 +0.7
29,381 - GFF1381 0.87 -0.3
29,384 - GFF1381 0.88 -0.4
29,413 - -0.1
29,413 - -0.2
29,427 + +0.0
29,441 - -0.3
29,501 + -0.5
29,547 + GFF1382 0.22 -0.5
29,703 - -1.3
29,724 - -0.4
30,162 - GFF1383 0.47 +0.3
30,584 - -0.0
30,600 - -0.4
30,663 + -2.1
30,664 - +0.2

Or see this region's nucleotide sequence