Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1094

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1092 and GFF1093 are separated by 168 nucleotidesGFF1093 and GFF1094 are separated by 60 nucleotidesGFF1094 and GFF1095 are separated by 16 nucleotidesGFF1095 and GFF1096 are separated by 380 nucleotides GFF1092 - Putative arylsulfatase regulatory protein, at 275,798 to 276,745 GFF1092 GFF1093 - Putative phage protein, at 276,914 to 277,216 GFF1093 GFF1094 - FIG01045823: hypothetical protein, at 277,277 to 277,810 GFF1094 GFF1095 - Putative membrane protein, at 277,827 to 278,270 GFF1095 GFF1096 - Chitinase (EC 3.2.1.14), at 278,651 to 280,750 GFF1096 Position (kb) 277 278Strain fitness (log2 ratio) -1 0 1at 277.346 kb on + strand, within GFF1094at 277.350 kb on + strand, within GFF1094at 277.543 kb on - strand, within GFF1094at 277.864 kb on - strandat 278.055 kb on + strand, within GFF1095at 278.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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277,346 + GFF1094 0.13 -0.1
277,350 + GFF1094 0.14 -1.5
277,543 - GFF1094 0.50 -1.0
277,864 - -1.0
278,055 + GFF1095 0.51 +0.1
278,783 - -0.3

Or see this region's nucleotide sequence