Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1065 and GFF1066 are separated by 12 nucleotides GFF1066 and GFF1067 overlap by 1 nucleotides GFF1067 and GFF1068 are separated by 57 nucleotides
GFF1065 - Conserved uncharacterized protein CreA, at 247,084 to 247,572
GFF1065
GFF1066 - Two-component response regulator CreB, at 247,585 to 248,274
GFF1066
GFF1067 - Two-component response regulator CreC, at 248,274 to 249,698
GFF1067
GFF1068 - Inner membrane protein CreD, at 249,756 to 251,105
GFF1068
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 247.292 kb on + strand, within GFF1065 at 247.462 kb on + strand, within GFF1065 at 247.462 kb on + strand, within GFF1065 at 247.498 kb on + strand, within GFF1065 at 247.645 kb on + strand at 247.885 kb on + strand, within GFF1066 at 247.886 kb on - strand, within GFF1066 at 248.128 kb on - strand, within GFF1066 at 248.202 kb on - strand, within GFF1066 at 248.255 kb on - strand at 248.305 kb on - strand at 248.346 kb on - strand at 248.550 kb on + strand, within GFF1067 at 248.555 kb on + strand, within GFF1067 at 248.555 kb on + strand, within GFF1067 at 248.555 kb on + strand, within GFF1067 at 248.556 kb on - strand, within GFF1067 at 248.559 kb on + strand, within GFF1067 at 248.560 kb on - strand, within GFF1067 at 248.560 kb on - strand, within GFF1067 at 248.623 kb on - strand, within GFF1067 at 248.648 kb on + strand, within GFF1067 at 248.706 kb on - strand, within GFF1067 at 248.718 kb on + strand, within GFF1067 at 248.718 kb on + strand, within GFF1067 at 248.718 kb on + strand, within GFF1067 at 248.718 kb on + strand, within GFF1067 at 248.722 kb on + strand, within GFF1067 at 249.054 kb on + strand, within GFF1067 at 249.055 kb on - strand, within GFF1067 at 249.055 kb on - strand, within GFF1067 at 249.055 kb on - strand, within GFF1067 at 249.163 kb on + strand, within GFF1067 at 249.271 kb on + strand, within GFF1067 at 249.272 kb on - strand, within GFF1067 at 249.276 kb on - strand, within GFF1067 at 249.446 kb on - strand, within GFF1067 at 249.446 kb on - strand, within GFF1067 at 249.544 kb on - strand, within GFF1067 at 249.696 kb on + strand at 249.697 kb on - strand at 249.726 kb on + strand at 249.756 kb on - strand at 249.878 kb on - strand at 249.991 kb on - strand, within GFF1068 at 250.002 kb on + strand, within GFF1068 at 250.003 kb on - strand, within GFF1068 at 250.003 kb on - strand, within GFF1068 at 250.003 kb on - strand, within GFF1068 at 250.069 kb on + strand, within GFF1068 at 250.069 kb on + strand, within GFF1068 at 250.073 kb on + strand, within GFF1068 at 250.074 kb on - strand, within GFF1068 at 250.182 kb on - strand, within GFF1068
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 247,292 + GFF1065 0.43 +0.4 247,462 + GFF1065 0.77 -0.1 247,462 + GFF1065 0.77 -0.5 247,498 + GFF1065 0.85 +0.1 247,645 + -0.2 247,885 + GFF1066 0.43 +0.2 247,886 - GFF1066 0.44 -0.9 248,128 - GFF1066 0.79 -0.9 248,202 - GFF1066 0.89 -0.7 248,255 - -1.0 248,305 - -0.1 248,346 - +0.4 248,550 + GFF1067 0.19 +0.2 248,555 + GFF1067 0.20 -0.4 248,555 + GFF1067 0.20 -0.3 248,555 + GFF1067 0.20 -0.0 248,556 - GFF1067 0.20 +0.1 248,559 + GFF1067 0.20 -0.2 248,560 - GFF1067 0.20 -0.1 248,560 - GFF1067 0.20 +0.2 248,623 - GFF1067 0.24 -0.3 248,648 + GFF1067 0.26 -0.1 248,706 - GFF1067 0.30 -0.1 248,718 + GFF1067 0.31 -0.2 248,718 + GFF1067 0.31 -1.9 248,718 + GFF1067 0.31 +0.1 248,718 + GFF1067 0.31 +0.3 248,722 + GFF1067 0.31 -0.1 249,054 + GFF1067 0.55 +0.0 249,055 - GFF1067 0.55 -0.7 249,055 - GFF1067 0.55 -1.4 249,055 - GFF1067 0.55 +0.2 249,163 + GFF1067 0.62 -0.0 249,271 + GFF1067 0.70 +0.1 249,272 - GFF1067 0.70 +0.2 249,276 - GFF1067 0.70 -1.1 249,446 - GFF1067 0.82 -0.6 249,446 - GFF1067 0.82 -0.6 249,544 - GFF1067 0.89 -0.5 249,696 + +0.1 249,697 - +0.1 249,726 + -0.2 249,756 - +0.5 249,878 - +0.1 249,991 - GFF1068 0.17 -0.1 250,002 + GFF1068 0.18 +0.3 250,003 - GFF1068 0.18 -0.7 250,003 - GFF1068 0.18 -0.1 250,003 - GFF1068 0.18 +1.3 250,069 + GFF1068 0.23 -0.3 250,069 + GFF1068 0.23 +0.1 250,073 + GFF1068 0.23 +0.6 250,074 - GFF1068 0.24 +0.6 250,182 - GFF1068 0.32 +0.1
Or see this region's nucleotide sequence