Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3830 and Atu3831 are separated by 319 nucleotides Atu3831 and Atu3832 are separated by 207 nucleotides
Atu3830: Atu3830 - MFS permease, at 925,369 to 926,625
Atu3830
Atu3831: Atu3831 - phage-related integrase, at 926,945 to 928,135
Atu3831
Atu3832: Atu3832 - hypothetical protein, at 928,343 to 929,884
Atu3832
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -2
-1
0
1 at 926.069 kb on + strand, within Atu3830 at 926.132 kb on + strand, within Atu3830 at 926.132 kb on + strand, within Atu3830 at 926.140 kb on - strand, within Atu3830 at 926.140 kb on - strand, within Atu3830 at 926.206 kb on + strand, within Atu3830 at 926.214 kb on - strand, within Atu3830 at 926.214 kb on - strand, within Atu3830 at 926.214 kb on - strand, within Atu3830 at 926.237 kb on - strand, within Atu3830 at 926.255 kb on + strand, within Atu3830 at 926.293 kb on - strand, within Atu3830 at 926.398 kb on - strand, within Atu3830 at 926.534 kb on + strand at 926.542 kb on - strand at 926.542 kb on - strand at 926.587 kb on + strand at 926.692 kb on + strand at 926.729 kb on - strand at 926.838 kb on - strand at 926.926 kb on + strand at 927.000 kb on - strand at 927.026 kb on - strand at 927.053 kb on + strand at 927.137 kb on - strand, within Atu3831 at 927.151 kb on + strand, within Atu3831 at 927.193 kb on + strand, within Atu3831 at 927.273 kb on - strand, within Atu3831 at 927.338 kb on - strand, within Atu3831 at 927.469 kb on + strand, within Atu3831 at 927.478 kb on + strand, within Atu3831 at 927.484 kb on - strand, within Atu3831 at 927.486 kb on - strand, within Atu3831 at 927.488 kb on + strand, within Atu3831 at 927.488 kb on + strand, within Atu3831 at 927.562 kb on + strand, within Atu3831 at 927.569 kb on + strand, within Atu3831 at 927.617 kb on + strand, within Atu3831 at 927.618 kb on - strand, within Atu3831 at 927.618 kb on - strand, within Atu3831 at 927.646 kb on - strand, within Atu3831 at 927.653 kb on + strand, within Atu3831 at 927.673 kb on - strand, within Atu3831 at 927.683 kb on - strand, within Atu3831 at 927.745 kb on + strand, within Atu3831 at 927.787 kb on + strand, within Atu3831 at 927.791 kb on + strand, within Atu3831 at 927.797 kb on - strand, within Atu3831 at 927.853 kb on + strand, within Atu3831 at 927.896 kb on + strand, within Atu3831 at 927.896 kb on + strand, within Atu3831 at 927.911 kb on + strand, within Atu3831 at 927.916 kb on + strand, within Atu3831 at 927.924 kb on - strand, within Atu3831 at 927.926 kb on + strand, within Atu3831 at 927.965 kb on - strand, within Atu3831 at 927.995 kb on - strand, within Atu3831 at 928.006 kb on + strand, within Atu3831 at 928.009 kb on - strand, within Atu3831 at 928.014 kb on - strand, within Atu3831 at 928.014 kb on - strand, within Atu3831 at 928.037 kb on + strand at 928.204 kb on - strand at 928.212 kb on + strand at 928.222 kb on + strand at 928.230 kb on - strand at 928.374 kb on + strand at 928.424 kb on + strand at 928.833 kb on + strand, within Atu3832 at 928.883 kb on - strand, within Atu3832
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 926,069 + Atu3830 0.56 +0.2 926,132 + Atu3830 0.61 -0.3 926,132 + Atu3830 0.61 +0.2 926,140 - Atu3830 0.61 -0.5 926,140 - Atu3830 0.61 +1.1 926,206 + Atu3830 0.67 -0.3 926,214 - Atu3830 0.67 +0.3 926,214 - Atu3830 0.67 +0.4 926,214 - Atu3830 0.67 -0.3 926,237 - Atu3830 0.69 -0.0 926,255 + Atu3830 0.70 +0.2 926,293 - Atu3830 0.74 +0.5 926,398 - Atu3830 0.82 -0.0 926,534 + -0.7 926,542 - +0.9 926,542 - -0.1 926,587 + +1.5 926,692 + +0.8 926,729 - +0.7 926,838 - -0.5 926,926 + -0.1 927,000 - -0.3 927,026 - +0.5 927,053 + +0.3 927,137 - Atu3831 0.16 -0.3 927,151 + Atu3831 0.17 -1.4 927,193 + Atu3831 0.21 -0.6 927,273 - Atu3831 0.28 -1.8 927,338 - Atu3831 0.33 -1.2 927,469 + Atu3831 0.44 -0.5 927,478 + Atu3831 0.45 -0.5 927,484 - Atu3831 0.45 -0.1 927,486 - Atu3831 0.45 +0.2 927,488 + Atu3831 0.46 +0.3 927,488 + Atu3831 0.46 +0.1 927,562 + Atu3831 0.52 +0.4 927,569 + Atu3831 0.52 +1.5 927,617 + Atu3831 0.56 -0.9 927,618 - Atu3831 0.57 +0.5 927,618 - Atu3831 0.57 +0.5 927,646 - Atu3831 0.59 +0.8 927,653 + Atu3831 0.59 +0.0 927,673 - Atu3831 0.61 -1.6 927,683 - Atu3831 0.62 -0.5 927,745 + Atu3831 0.67 -0.1 927,787 + Atu3831 0.71 -0.3 927,791 + Atu3831 0.71 -0.6 927,797 - Atu3831 0.72 -0.1 927,853 + Atu3831 0.76 +0.5 927,896 + Atu3831 0.80 -0.3 927,896 + Atu3831 0.80 -0.5 927,911 + Atu3831 0.81 +0.2 927,916 + Atu3831 0.82 -0.6 927,924 - Atu3831 0.82 -0.4 927,926 + Atu3831 0.82 -1.3 927,965 - Atu3831 0.86 +0.1 927,995 - Atu3831 0.88 -0.2 928,006 + Atu3831 0.89 -0.5 928,009 - Atu3831 0.89 +0.2 928,014 - Atu3831 0.90 -1.0 928,014 - Atu3831 0.90 -1.1 928,037 + -0.1 928,204 - -0.3 928,212 + +0.7 928,222 + -0.1 928,230 - +0.1 928,374 + +0.9 928,424 + -0.5 928,833 + Atu3832 0.32 -0.3 928,883 - Atu3832 0.35 -1.5
Or see this region's nucleotide sequence