Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0242 and Atu0243 overlap by 4 nucleotides Atu0243 and Atu8117 are separated by 66 nucleotides Atu8117 and Atu0245 are separated by 96 nucleotides Atu0245 and Atu0246 are separated by 17 nucleotides
Atu0242: Atu0242 - carbon-nitrogen hydrolase, at 241,938 to 242,807
Atu0242
Atu0243: Atu0243 - hypothetical protein, at 242,804 to 243,415
Atu0243
Atu8117: Atu8117 - hypothetical protein, at 243,482 to 243,883
Atu8117
Atu0245: Atu0245 - transcriptional regulator, at 243,980 to 244,561
Atu0245
Atu0246: Atu0246 - acetyltransferase, at 244,579 to 245,097
Atu0246
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 242.535 kb on - strand, within Atu0242 at 242.569 kb on + strand, within Atu0242 at 242.576 kb on + strand, within Atu0242 at 242.622 kb on + strand, within Atu0242 at 242.756 kb on + strand at 242.761 kb on + strand at 242.761 kb on + strand at 242.764 kb on - strand at 242.764 kb on - strand at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.135 kb on - strand, within Atu0243 at 243.142 kb on - strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.169 kb on + strand, within Atu0243 at 243.310 kb on - strand, within Atu0243 at 243.344 kb on - strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.425 kb on + strand at 243.433 kb on - strand at 243.433 kb on - strand at 243.518 kb on - strand at 243.534 kb on - strand, within Atu8117 at 243.580 kb on - strand, within Atu8117 at 243.713 kb on - strand, within Atu8117 at 243.815 kb on - strand, within Atu8117 at 243.848 kb on + strand at 244.020 kb on - strand at 244.156 kb on + strand, within Atu0245 at 244.166 kb on + strand, within Atu0245 at 244.169 kb on - strand, within Atu0245 at 244.174 kb on - strand, within Atu0245 at 244.239 kb on + strand, within Atu0245 at 244.246 kb on + strand, within Atu0245 at 244.258 kb on + strand, within Atu0245 at 244.439 kb on + strand, within Atu0245 at 244.442 kb on - strand, within Atu0245 at 244.445 kb on + strand, within Atu0245 at 244.553 kb on - strand at 244.573 kb on - strand at 244.714 kb on - strand, within Atu0246 at 244.759 kb on + strand, within Atu0246 at 244.784 kb on + strand, within Atu0246 at 244.791 kb on + strand, within Atu0246 at 244.799 kb on - strand, within Atu0246 at 244.799 kb on - strand, within Atu0246
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 242,535 - Atu0242 0.69 -1.1 242,569 + Atu0242 0.73 +0.6 242,576 + Atu0242 0.73 +0.0 242,622 + Atu0242 0.79 +0.7 242,756 + -0.1 242,761 + +0.3 242,761 + -2.2 242,764 - -1.0 242,764 - -2.5 243,067 + Atu0243 0.43 -1.3 243,067 + Atu0243 0.43 +0.1 243,067 + Atu0243 0.43 -0.5 243,067 + Atu0243 0.43 +0.1 243,067 + Atu0243 0.43 -0.1 243,067 + Atu0243 0.43 -0.1 243,075 - Atu0243 0.44 -1.0 243,075 - Atu0243 0.44 -0.1 243,075 - Atu0243 0.44 +0.3 243,075 - Atu0243 0.44 +1.2 243,075 - Atu0243 0.44 +0.2 243,135 - Atu0243 0.54 -0.2 243,142 - Atu0243 0.55 -0.2 243,159 + Atu0243 0.58 -0.4 243,159 + Atu0243 0.58 -0.5 243,167 - Atu0243 0.59 +0.5 243,167 - Atu0243 0.59 +0.1 243,169 + Atu0243 0.60 +0.4 243,310 - Atu0243 0.83 +0.3 243,344 - Atu0243 0.88 +0.4 243,345 + Atu0243 0.88 -0.5 243,345 + Atu0243 0.88 +0.4 243,425 + -1.1 243,433 - -1.5 243,433 - +1.0 243,518 - -1.3 243,534 - Atu8117 0.13 -3.3 243,580 - Atu8117 0.24 -0.5 243,713 - Atu8117 0.57 -0.3 243,815 - Atu8117 0.83 -1.1 243,848 + +1.7 244,020 - +0.5 244,156 + Atu0245 0.30 +0.0 244,166 + Atu0245 0.32 -1.3 244,169 - Atu0245 0.32 -0.4 244,174 - Atu0245 0.33 -0.7 244,239 + Atu0245 0.45 +0.1 244,246 + Atu0245 0.46 -0.8 244,258 + Atu0245 0.48 -0.3 244,439 + Atu0245 0.79 +0.5 244,442 - Atu0245 0.79 -0.7 244,445 + Atu0245 0.80 +0.3 244,553 - +0.5 244,573 - -0.2 244,714 - Atu0246 0.26 +0.1 244,759 + Atu0246 0.35 -0.1 244,784 + Atu0246 0.39 +0.4 244,791 + Atu0246 0.41 -0.2 244,799 - Atu0246 0.42 -0.7 244,799 - Atu0246 0.42 -1.0
Or see this region's nucleotide sequence