Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3404 and Atu3405 are separated by 15 nucleotides Atu3405 and Atu3406 are separated by 323 nucleotides
Atu3404: Atu3404 - oxidoreductase, at 449,217 to 450,491
Atu3404
Atu3405: Atu3405 - haloalkanoic acid dehalogenase, at 450,507 to 451,175
Atu3405
Atu3406: Atu3406 - hypothetical protein, at 451,499 to 452,335
Atu3406
Position (kb) 450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 449.607 kb on + strand, within Atu3404 at 449.624 kb on + strand, within Atu3404 at 449.632 kb on - strand, within Atu3404 at 449.674 kb on - strand, within Atu3404 at 449.697 kb on - strand, within Atu3404 at 449.697 kb on - strand, within Atu3404 at 449.780 kb on + strand, within Atu3404 at 449.780 kb on + strand, within Atu3404 at 449.788 kb on - strand, within Atu3404 at 449.794 kb on + strand, within Atu3404 at 449.815 kb on + strand, within Atu3404 at 449.845 kb on + strand, within Atu3404 at 449.864 kb on + strand, within Atu3404 at 449.872 kb on - strand, within Atu3404 at 449.872 kb on - strand, within Atu3404 at 449.927 kb on - strand, within Atu3404 at 450.123 kb on - strand, within Atu3404 at 450.207 kb on + strand, within Atu3404 at 450.212 kb on + strand, within Atu3404 at 450.215 kb on - strand, within Atu3404 at 450.375 kb on + strand at 450.422 kb on - strand at 450.433 kb on - strand at 450.440 kb on - strand at 450.502 kb on + strand at 450.524 kb on - strand at 450.586 kb on - strand, within Atu3405 at 450.603 kb on - strand, within Atu3405 at 450.740 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.769 kb on - strand, within Atu3405 at 450.771 kb on - strand, within Atu3405 at 450.825 kb on - strand, within Atu3405 at 450.825 kb on - strand, within Atu3405 at 450.853 kb on + strand, within Atu3405 at 450.853 kb on + strand, within Atu3405 at 450.876 kb on - strand, within Atu3405 at 450.941 kb on - strand, within Atu3405 at 450.966 kb on + strand, within Atu3405 at 450.974 kb on - strand, within Atu3405 at 451.015 kb on + strand, within Atu3405 at 451.019 kb on + strand, within Atu3405 at 451.242 kb on + strand at 451.341 kb on - strand at 451.424 kb on - strand at 451.510 kb on + strand at 451.577 kb on + strand at 451.604 kb on + strand, within Atu3406 at 451.609 kb on + strand, within Atu3406 at 451.627 kb on + strand, within Atu3406 at 451.698 kb on - strand, within Atu3406 at 451.829 kb on - strand, within Atu3406 at 451.888 kb on + strand, within Atu3406 at 451.911 kb on + strand, within Atu3406 at 451.961 kb on + strand, within Atu3406 at 451.969 kb on - strand, within Atu3406 at 451.979 kb on + strand, within Atu3406 at 452.000 kb on - strand, within Atu3406 at 452.073 kb on + strand, within Atu3406 at 452.160 kb on - strand, within Atu3406
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 449,607 + Atu3404 0.31 -0.2 449,624 + Atu3404 0.32 +0.1 449,632 - Atu3404 0.33 +0.5 449,674 - Atu3404 0.36 -0.6 449,697 - Atu3404 0.38 +0.1 449,697 - Atu3404 0.38 -0.8 449,780 + Atu3404 0.44 -0.6 449,780 + Atu3404 0.44 +0.9 449,788 - Atu3404 0.45 +1.1 449,794 + Atu3404 0.45 +0.1 449,815 + Atu3404 0.47 -1.2 449,845 + Atu3404 0.49 -0.2 449,864 + Atu3404 0.51 +0.2 449,872 - Atu3404 0.51 +0.9 449,872 - Atu3404 0.51 -0.2 449,927 - Atu3404 0.56 -0.9 450,123 - Atu3404 0.71 +0.0 450,207 + Atu3404 0.78 +1.7 450,212 + Atu3404 0.78 +0.0 450,215 - Atu3404 0.78 -0.6 450,375 + -0.2 450,422 - +0.0 450,433 - +0.7 450,440 - -0.1 450,502 + +0.1 450,524 - -1.3 450,586 - Atu3405 0.12 -0.8 450,603 - Atu3405 0.14 -0.6 450,740 + Atu3405 0.35 +0.8 450,763 + Atu3405 0.38 -1.0 450,763 + Atu3405 0.38 -0.4 450,763 + Atu3405 0.38 +0.9 450,763 + Atu3405 0.38 +0.3 450,769 - Atu3405 0.39 -2.0 450,771 - Atu3405 0.39 -0.1 450,825 - Atu3405 0.48 -0.1 450,825 - Atu3405 0.48 -0.6 450,853 + Atu3405 0.52 -1.6 450,853 + Atu3405 0.52 -0.1 450,876 - Atu3405 0.55 -1.3 450,941 - Atu3405 0.65 -0.6 450,966 + Atu3405 0.69 +0.7 450,974 - Atu3405 0.70 -0.2 451,015 + Atu3405 0.76 -0.5 451,019 + Atu3405 0.77 -0.2 451,242 + -1.1 451,341 - +0.0 451,424 - -0.1 451,510 + +0.2 451,577 + -0.1 451,604 + Atu3406 0.13 -1.2 451,609 + Atu3406 0.13 -0.5 451,627 + Atu3406 0.15 -2.2 451,698 - Atu3406 0.24 -0.4 451,829 - Atu3406 0.39 -3.2 451,888 + Atu3406 0.46 +0.4 451,911 + Atu3406 0.49 -0.7 451,961 + Atu3406 0.55 -1.1 451,969 - Atu3406 0.56 +0.3 451,979 + Atu3406 0.57 -1.2 452,000 - Atu3406 0.60 -1.4 452,073 + Atu3406 0.69 -0.3 452,160 - Atu3406 0.79 -0.0
Or see this region's nucleotide sequence