Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0198 and Atu0199 are separated by 104 nucleotides Atu0199 and Atu0200 are separated by 150 nucleotides
Atu0198: Atu0198 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 201,953 to 203,098
Atu0198
Atu0199: Atu0199 - ABC transporter, substrate binding protein (proline/glycine/betaine), at 203,203 to 204,114
Atu0199
Atu0200: Atu0200 - hypothetical protein, at 204,265 to 205,311
Atu0200
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1
2 at 202.243 kb on + strand, within Atu0198 at 202.251 kb on - strand, within Atu0198 at 202.251 kb on - strand, within Atu0198 at 202.251 kb on - strand, within Atu0198 at 202.382 kb on - strand, within Atu0198 at 202.434 kb on + strand, within Atu0198 at 202.442 kb on - strand, within Atu0198 at 202.442 kb on - strand, within Atu0198 at 202.468 kb on - strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.481 kb on + strand, within Atu0198 at 202.489 kb on - strand, within Atu0198 at 202.510 kb on + strand, within Atu0198 at 202.596 kb on - strand, within Atu0198 at 202.623 kb on + strand, within Atu0198 at 202.631 kb on - strand, within Atu0198 at 202.722 kb on + strand, within Atu0198 at 202.730 kb on - strand, within Atu0198 at 202.766 kb on - strand, within Atu0198 at 202.824 kb on - strand, within Atu0198 at 202.956 kb on + strand, within Atu0198 at 202.988 kb on - strand at 202.997 kb on - strand at 203.155 kb on + strand at 203.173 kb on - strand at 203.246 kb on + strand at 203.254 kb on - strand at 203.254 kb on - strand at 203.269 kb on - strand at 203.290 kb on + strand at 203.290 kb on + strand at 203.311 kb on - strand, within Atu0199 at 203.418 kb on - strand, within Atu0199 at 203.450 kb on - strand, within Atu0199 at 203.462 kb on + strand, within Atu0199 at 203.470 kb on - strand, within Atu0199 at 203.470 kb on - strand, within Atu0199 at 203.593 kb on + strand, within Atu0199 at 203.593 kb on + strand, within Atu0199 at 203.593 kb on + strand, within Atu0199 at 203.719 kb on - strand, within Atu0199 at 203.802 kb on + strand, within Atu0199 at 203.885 kb on - strand, within Atu0199 at 203.885 kb on - strand, within Atu0199 at 203.928 kb on + strand, within Atu0199 at 203.971 kb on - strand, within Atu0199 at 203.971 kb on - strand, within Atu0199 at 203.973 kb on + strand, within Atu0199 at 204.089 kb on - strand at 204.123 kb on - strand at 204.130 kb on + strand at 204.235 kb on + strand at 204.403 kb on + strand, within Atu0200 at 204.440 kb on + strand, within Atu0200 at 204.546 kb on + strand, within Atu0200 at 204.606 kb on + strand, within Atu0200 at 204.803 kb on + strand, within Atu0200 at 204.806 kb on - strand, within Atu0200 at 204.871 kb on - strand, within Atu0200 at 204.881 kb on - strand, within Atu0200 at 204.986 kb on + strand, within Atu0200 at 205.066 kb on - strand, within Atu0200
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 202,243 + Atu0198 0.25 -0.2 202,251 - Atu0198 0.26 +0.1 202,251 - Atu0198 0.26 +0.8 202,251 - Atu0198 0.26 +0.3 202,382 - Atu0198 0.37 +0.7 202,434 + Atu0198 0.42 +1.3 202,442 - Atu0198 0.43 -0.2 202,442 - Atu0198 0.43 -0.6 202,468 - Atu0198 0.45 +0.0 202,481 + Atu0198 0.46 +0.1 202,481 + Atu0198 0.46 -0.4 202,481 + Atu0198 0.46 -0.5 202,481 + Atu0198 0.46 -1.1 202,481 + Atu0198 0.46 +0.6 202,489 - Atu0198 0.47 -0.4 202,510 + Atu0198 0.49 +0.6 202,596 - Atu0198 0.56 -0.3 202,623 + Atu0198 0.58 +0.9 202,631 - Atu0198 0.59 +0.1 202,722 + Atu0198 0.67 -0.4 202,730 - Atu0198 0.68 +0.5 202,766 - Atu0198 0.71 -0.2 202,824 - Atu0198 0.76 -1.1 202,956 + Atu0198 0.88 -0.1 202,988 - -1.3 202,997 - -0.1 203,155 + -0.2 203,173 - -0.2 203,246 + +0.5 203,254 - -0.1 203,254 - +0.6 203,269 - +0.1 203,290 + -0.8 203,290 + -0.0 203,311 - Atu0199 0.12 -0.7 203,418 - Atu0199 0.24 +0.1 203,450 - Atu0199 0.27 +1.1 203,462 + Atu0199 0.28 -0.5 203,470 - Atu0199 0.29 +0.0 203,470 - Atu0199 0.29 -0.6 203,593 + Atu0199 0.43 -0.5 203,593 + Atu0199 0.43 +0.1 203,593 + Atu0199 0.43 +0.9 203,719 - Atu0199 0.57 -0.2 203,802 + Atu0199 0.66 +0.9 203,885 - Atu0199 0.75 +0.1 203,885 - Atu0199 0.75 +0.3 203,928 + Atu0199 0.79 -1.1 203,971 - Atu0199 0.84 +0.6 203,971 - Atu0199 0.84 +0.4 203,973 + Atu0199 0.84 +0.3 204,089 - -0.3 204,123 - -0.2 204,130 + +1.0 204,235 + -0.1 204,403 + Atu0200 0.13 -0.2 204,440 + Atu0200 0.17 -0.0 204,546 + Atu0200 0.27 +0.9 204,606 + Atu0200 0.33 -0.0 204,803 + Atu0200 0.51 -0.4 204,806 - Atu0200 0.52 +0.9 204,871 - Atu0200 0.58 +1.8 204,881 - Atu0200 0.59 +0.3 204,986 + Atu0200 0.69 +0.1 205,066 - Atu0200 0.77 -0.3
Or see this region's nucleotide sequence