Strain Fitness in Agrobacterium fabrum C58 around Atu3695

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3694 and Atu3695 are separated by 29 nucleotidesAtu3695 and Atu3696 are separated by 118 nucleotidesAtu3696 and Atu3697 are separated by 10 nucleotides Atu3694: Atu3694 - penicillin binding protein, at 769,161 to 771,206 Atu3694 Atu3695: Atu3695 - hypothetical protein, at 771,236 to 776,692 Atu3695 Atu3696: Atu3696 - hypothetical protein, at 776,811 to 776,999 Atu3696 Atu3697: Atu3697 - ATP-dependent protease LA 2, at 777,010 to 777,657 Atu3697 Position (kb) 771 772 773 774 775 776 777Strain fitness (log2 ratio) -2 -1 0 1 2 3at 770.242 kb on + strand, within Atu3694at 770.314 kb on + strand, within Atu3694at 770.530 kb on + strand, within Atu3694at 770.646 kb on + strand, within Atu3694at 770.705 kb on - strand, within Atu3694at 770.710 kb on + strand, within Atu3694at 770.718 kb on - strand, within Atu3694at 770.944 kb on + strand, within Atu3694at 770.947 kb on - strand, within Atu3694at 771.029 kb on - strandat 771.104 kb on - strandat 771.112 kb on - strandat 771.148 kb on + strandat 771.148 kb on + strandat 771.156 kb on - strandat 771.156 kb on - strandat 771.358 kb on + strandat 771.455 kb on - strandat 771.584 kb on - strandat 771.608 kb on - strandat 771.627 kb on - strandat 771.657 kb on - strandat 771.724 kb on + strandat 771.727 kb on - strandat 771.761 kb on + strandat 771.769 kb on - strandat 771.781 kb on + strandat 771.906 kb on - strand, within Atu3695at 771.917 kb on - strand, within Atu3695at 772.031 kb on + strand, within Atu3695at 772.039 kb on - strand, within Atu3695at 772.087 kb on - strand, within Atu3695at 772.109 kb on - strand, within Atu3695at 772.112 kb on + strand, within Atu3695at 772.112 kb on + strand, within Atu3695at 772.112 kb on + strand, within Atu3695at 772.154 kb on - strand, within Atu3695at 772.154 kb on - strand, within Atu3695at 772.230 kb on - strand, within Atu3695at 772.316 kb on + strand, within Atu3695at 772.358 kb on - strand, within Atu3695at 772.358 kb on - strand, within Atu3695at 772.440 kb on - strand, within Atu3695at 772.490 kb on - strand, within Atu3695at 772.545 kb on + strand, within Atu3695at 772.545 kb on + strand, within Atu3695at 772.681 kb on - strand, within Atu3695at 772.788 kb on + strand, within Atu3695at 772.810 kb on + strand, within Atu3695at 772.906 kb on - strand, within Atu3695at 773.003 kb on - strand, within Atu3695at 773.057 kb on + strand, within Atu3695at 773.121 kb on + strand, within Atu3695at 773.187 kb on + strand, within Atu3695at 773.252 kb on + strand, within Atu3695at 773.252 kb on + strand, within Atu3695at 773.255 kb on - strand, within Atu3695at 773.260 kb on - strand, within Atu3695at 773.260 kb on - strand, within Atu3695at 773.628 kb on + strand, within Atu3695at 773.633 kb on + strand, within Atu3695at 773.651 kb on - strand, within Atu3695at 773.706 kb on + strand, within Atu3695at 773.735 kb on + strand, within Atu3695at 773.788 kb on + strand, within Atu3695at 773.795 kb on - strand, within Atu3695at 773.823 kb on + strand, within Atu3695at 773.966 kb on - strand, within Atu3695at 774.014 kb on - strand, within Atu3695at 774.072 kb on - strand, within Atu3695at 774.090 kb on + strand, within Atu3695at 774.098 kb on - strand, within Atu3695at 774.108 kb on - strand, within Atu3695at 774.127 kb on + strand, within Atu3695at 774.205 kb on + strand, within Atu3695at 774.240 kb on + strand, within Atu3695at 774.306 kb on + strand, within Atu3695at 774.585 kb on - strand, within Atu3695at 774.680 kb on - strand, within Atu3695at 774.687 kb on + strand, within Atu3695at 774.695 kb on - strand, within Atu3695at 774.785 kb on + strand, within Atu3695at 774.822 kb on - strand, within Atu3695at 774.860 kb on + strand, within Atu3695at 774.862 kb on + strand, within Atu3695at 774.905 kb on + strand, within Atu3695at 774.911 kb on - strand, within Atu3695at 774.913 kb on - strand, within Atu3695at 774.961 kb on - strand, within Atu3695at 775.032 kb on - strand, within Atu3695at 775.063 kb on - strand, within Atu3695at 775.073 kb on - strand, within Atu3695at 775.106 kb on + strand, within Atu3695at 775.167 kb on - strand, within Atu3695at 775.203 kb on + strand, within Atu3695at 775.303 kb on + strand, within Atu3695at 775.318 kb on - strand, within Atu3695at 775.327 kb on + strand, within Atu3695at 775.329 kb on + strand, within Atu3695at 775.383 kb on - strand, within Atu3695at 775.388 kb on - strand, within Atu3695at 775.512 kb on + strand, within Atu3695at 775.520 kb on - strand, within Atu3695at 775.527 kb on - strand, within Atu3695at 775.583 kb on - strand, within Atu3695at 775.583 kb on - strand, within Atu3695at 775.583 kb on - strand, within Atu3695at 775.724 kb on + strand, within Atu3695at 775.866 kb on - strand, within Atu3695at 775.866 kb on - strand, within Atu3695at 775.866 kb on - strand, within Atu3695at 775.903 kb on - strand, within Atu3695at 775.927 kb on + strand, within Atu3695at 775.969 kb on + strand, within Atu3695at 775.975 kb on - strand, within Atu3695at 776.007 kb on - strand, within Atu3695at 776.030 kb on + strand, within Atu3695at 776.176 kb on - strandat 776.210 kb on - strandat 776.250 kb on + strandat 776.365 kb on - strandat 776.429 kb on - strandat 776.483 kb on + strandat 776.720 kb on + strandat 776.799 kb on + strandat 777.055 kb on + strandat 777.168 kb on + strand, within Atu3697at 777.196 kb on + strand, within Atu3697at 777.242 kb on + strand, within Atu3697at 777.299 kb on + strand, within Atu3697at 777.408 kb on - strand, within Atu3697at 777.501 kb on + strand, within Atu3697at 777.534 kb on - strand, within Atu3697

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
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770,242 + Atu3694 0.53 -0.8
770,314 + Atu3694 0.56 -0.2
770,530 + Atu3694 0.67 -0.1
770,646 + Atu3694 0.73 -0.2
770,705 - Atu3694 0.75 +0.0
770,710 + Atu3694 0.76 +0.3
770,718 - Atu3694 0.76 -0.4
770,944 + Atu3694 0.87 -0.8
770,947 - Atu3694 0.87 -0.4
771,029 - -0.5
771,104 - +0.2
771,112 - -1.8
771,148 + +1.5
771,148 + -1.5
771,156 - +0.2
771,156 - -0.2
771,358 + -0.8
771,455 - -0.1
771,584 - +0.4
771,608 - +0.2
771,627 - +1.8
771,657 - +0.3
771,724 + +1.1
771,727 - -0.8
771,761 + -1.8
771,769 - +0.5
771,781 + +0.2
771,906 - Atu3695 0.12 -1.3
771,917 - Atu3695 0.12 -0.4
772,031 + Atu3695 0.15 -0.7
772,039 - Atu3695 0.15 +0.2
772,087 - Atu3695 0.16 -0.1
772,109 - Atu3695 0.16 +0.8
772,112 + Atu3695 0.16 -0.8
772,112 + Atu3695 0.16 -0.6
772,112 + Atu3695 0.16 +0.4
772,154 - Atu3695 0.17 -2.6
772,154 - Atu3695 0.17 +0.1
772,230 - Atu3695 0.18 -0.5
772,316 + Atu3695 0.20 +0.2
772,358 - Atu3695 0.21 +0.8
772,358 - Atu3695 0.21 -0.1
772,440 - Atu3695 0.22 -0.1
772,490 - Atu3695 0.23 +0.0
772,545 + Atu3695 0.24 +0.3
772,545 + Atu3695 0.24 +1.0
772,681 - Atu3695 0.26 +1.0
772,788 + Atu3695 0.28 -0.1
772,810 + Atu3695 0.29 +1.1
772,906 - Atu3695 0.31 +0.5
773,003 - Atu3695 0.32 +0.6
773,057 + Atu3695 0.33 -1.2
773,121 + Atu3695 0.35 -0.1
773,187 + Atu3695 0.36 +0.1
773,252 + Atu3695 0.37 -0.1
773,252 + Atu3695 0.37 +0.5
773,255 - Atu3695 0.37 +0.1
773,260 - Atu3695 0.37 +0.7
773,260 - Atu3695 0.37 +0.5
773,628 + Atu3695 0.44 +0.0
773,633 + Atu3695 0.44 -0.3
773,651 - Atu3695 0.44 -0.4
773,706 + Atu3695 0.45 +0.4
773,735 + Atu3695 0.46 -0.5
773,788 + Atu3695 0.47 -0.0
773,795 - Atu3695 0.47 -0.1
773,823 + Atu3695 0.47 -0.9
773,966 - Atu3695 0.50 -0.3
774,014 - Atu3695 0.51 +0.8
774,072 - Atu3695 0.52 -0.0
774,090 + Atu3695 0.52 -0.6
774,098 - Atu3695 0.52 +1.4
774,108 - Atu3695 0.53 +0.8
774,127 + Atu3695 0.53 +1.5
774,205 + Atu3695 0.54 +0.7
774,240 + Atu3695 0.55 +0.2
774,306 + Atu3695 0.56 +1.8
774,585 - Atu3695 0.61 -0.0
774,680 - Atu3695 0.63 +1.8
774,687 + Atu3695 0.63 -0.9
774,695 - Atu3695 0.63 -1.1
774,785 + Atu3695 0.65 +0.6
774,822 - Atu3695 0.66 -0.2
774,860 + Atu3695 0.66 +0.0
774,862 + Atu3695 0.66 -0.1
774,905 + Atu3695 0.67 +0.4
774,911 - Atu3695 0.67 -0.1
774,913 - Atu3695 0.67 +1.3
774,961 - Atu3695 0.68 -2.2
775,032 - Atu3695 0.70 -1.0
775,063 - Atu3695 0.70 +0.5
775,073 - Atu3695 0.70 +0.1
775,106 + Atu3695 0.71 +0.5
775,167 - Atu3695 0.72 -0.6
775,203 + Atu3695 0.73 -0.2
775,303 + Atu3695 0.75 +0.0
775,318 - Atu3695 0.75 -0.7
775,327 + Atu3695 0.75 +0.8
775,329 + Atu3695 0.75 -0.0
775,383 - Atu3695 0.76 +1.8
775,388 - Atu3695 0.76 +0.6
775,512 + Atu3695 0.78 -0.2
775,520 - Atu3695 0.79 +0.3
775,527 - Atu3695 0.79 -0.2
775,583 - Atu3695 0.80 -0.1
775,583 - Atu3695 0.80 -2.7
775,583 - Atu3695 0.80 +0.9
775,724 + Atu3695 0.82 -0.5
775,866 - Atu3695 0.85 +2.8
775,866 - Atu3695 0.85 +0.4
775,866 - Atu3695 0.85 +0.8
775,903 - Atu3695 0.86 +0.5
775,927 + Atu3695 0.86 +0.4
775,969 + Atu3695 0.87 +0.1
775,975 - Atu3695 0.87 -0.3
776,007 - Atu3695 0.87 +1.8
776,030 + Atu3695 0.88 -0.8
776,176 - -0.3
776,210 - +0.5
776,250 + +0.8
776,365 - +1.6
776,429 - +0.8
776,483 + +0.3
776,720 + -0.3
776,799 + +0.3
777,055 + +0.0
777,168 + Atu3697 0.24 -0.0
777,196 + Atu3697 0.29 -1.5
777,242 + Atu3697 0.36 -0.4
777,299 + Atu3697 0.45 +0.0
777,408 - Atu3697 0.61 -0.5
777,501 + Atu3697 0.76 -0.4
777,534 - Atu3697 0.81 -1.1

Or see this region's nucleotide sequence