Strain Fitness in Agrobacterium fabrum C58 around Atu3320

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3318 and Atu3319 are separated by 270 nucleotidesAtu3319 and Atu3320 are separated by 385 nucleotidesAtu3320 and Atu3321 are separated by 148 nucleotides Atu3318: Atu3318 - LuxR family transcriptional regulator, at 349,345 to 350,115 Atu3318 Atu3319: Atu3319 - hypothetical protein, at 350,386 to 350,631 Atu3319 Atu3320: Atu3320 - fibrinogen binding protein, at 351,017 to 351,982 Atu3320 Atu3321: Atu3321 - hypothetical protein, at 352,131 to 354,152 Atu3321 Position (kb) 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 350.113 kb on - strandat 350.124 kb on + strandat 350.124 kb on + strandat 350.144 kb on + strandat 350.351 kb on - strandat 350.435 kb on + strand, within Atu3319at 350.456 kb on + strand, within Atu3319at 350.499 kb on + strand, within Atu3319at 350.507 kb on - strand, within Atu3319at 350.576 kb on - strand, within Atu3319at 350.634 kb on - strandat 350.716 kb on + strandat 350.791 kb on + strandat 350.829 kb on - strandat 350.844 kb on + strandat 350.844 kb on - strandat 350.852 kb on - strandat 350.852 kb on - strandat 350.871 kb on + strandat 350.879 kb on - strandat 350.879 kb on - strandat 350.937 kb on - strandat 350.937 kb on - strandat 350.942 kb on - strandat 351.027 kb on - strandat 351.110 kb on + strandat 351.118 kb on - strand, within Atu3320at 351.218 kb on - strand, within Atu3320at 351.265 kb on - strand, within Atu3320at 351.293 kb on - strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.325 kb on + strand, within Atu3320at 351.333 kb on - strand, within Atu3320at 351.409 kb on + strand, within Atu3320at 351.469 kb on - strand, within Atu3320at 351.503 kb on + strand, within Atu3320at 351.566 kb on + strand, within Atu3320at 351.566 kb on + strand, within Atu3320at 351.574 kb on - strand, within Atu3320at 351.581 kb on - strand, within Atu3320at 351.581 kb on - strand, within Atu3320at 351.584 kb on + strand, within Atu3320at 351.605 kb on - strand, within Atu3320at 351.659 kb on + strand, within Atu3320at 351.679 kb on - strand, within Atu3320at 351.742 kb on + strand, within Atu3320at 351.797 kb on + strand, within Atu3320at 351.830 kb on + strand, within Atu3320at 351.832 kb on + strand, within Atu3320at 351.838 kb on - strand, within Atu3320at 351.840 kb on - strand, within Atu3320at 351.850 kb on - strand, within Atu3320at 351.918 kb on - strandat 351.938 kb on + strandat 351.974 kb on - strandat 352.070 kb on + strandat 352.078 kb on - strandat 352.092 kb on + strandat 352.092 kb on + strandat 352.092 kb on + strandat 352.100 kb on - strandat 352.112 kb on - strandat 352.120 kb on - strandat 352.120 kb on - strandat 352.186 kb on - strandat 352.270 kb on + strandat 352.493 kb on + strand, within Atu3321at 352.527 kb on - strand, within Atu3321at 352.535 kb on + strand, within Atu3321at 352.543 kb on - strand, within Atu3321at 352.587 kb on - strand, within Atu3321at 352.619 kb on - strand, within Atu3321at 352.636 kb on - strand, within Atu3321at 352.714 kb on - strand, within Atu3321at 352.739 kb on - strand, within Atu3321at 352.815 kb on + strand, within Atu3321at 352.815 kb on + strand, within Atu3321at 352.939 kb on - strand, within Atu3321at 352.951 kb on + strand, within Atu3321at 352.951 kb on + strand, within Atu3321at 352.953 kb on + strand, within Atu3321at 352.959 kb on - strand, within Atu3321at 352.959 kb on - strand, within Atu3321

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
remove
350,113 - +0.4
350,124 + +0.9
350,124 + +0.3
350,144 + +0.2
350,351 - -2.2
350,435 + Atu3319 0.20 +0.4
350,456 + Atu3319 0.28 +0.3
350,499 + Atu3319 0.46 -0.3
350,507 - Atu3319 0.49 +0.2
350,576 - Atu3319 0.77 +0.2
350,634 - -0.3
350,716 + +1.6
350,791 + +0.8
350,829 - -2.7
350,844 + +0.5
350,844 - -0.1
350,852 - -0.7
350,852 - +0.3
350,871 + -0.2
350,879 - -0.7
350,879 - +0.2
350,937 - +0.9
350,937 - +0.6
350,942 - -0.1
351,027 - +1.2
351,110 + -0.2
351,118 - Atu3320 0.10 +0.1
351,218 - Atu3320 0.21 +0.2
351,265 - Atu3320 0.26 +0.6
351,293 - Atu3320 0.29 -1.1
351,325 + Atu3320 0.32 +0.2
351,325 + Atu3320 0.32 -0.4
351,325 + Atu3320 0.32 -1.5
351,325 + Atu3320 0.32 -0.9
351,325 + Atu3320 0.32 -0.1
351,333 - Atu3320 0.33 +0.3
351,409 + Atu3320 0.41 +1.3
351,469 - Atu3320 0.47 -0.3
351,503 + Atu3320 0.50 -0.9
351,566 + Atu3320 0.57 +0.0
351,566 + Atu3320 0.57 -0.4
351,574 - Atu3320 0.58 -2.2
351,581 - Atu3320 0.58 -0.9
351,581 - Atu3320 0.58 +0.9
351,584 + Atu3320 0.59 -0.7
351,605 - Atu3320 0.61 +0.1
351,659 + Atu3320 0.66 +0.7
351,679 - Atu3320 0.69 -0.4
351,742 + Atu3320 0.75 -0.5
351,797 + Atu3320 0.81 +0.3
351,830 + Atu3320 0.84 -1.2
351,832 + Atu3320 0.84 -0.5
351,838 - Atu3320 0.85 -3.1
351,840 - Atu3320 0.85 +0.0
351,850 - Atu3320 0.86 +0.7
351,918 - -0.6
351,938 + +1.6
351,974 - -0.1
352,070 + -1.0
352,078 - +0.0
352,092 + +0.0
352,092 + +0.0
352,092 + -1.9
352,100 - -0.7
352,112 - +2.3
352,120 - +0.3
352,120 - +0.6
352,186 - -0.7
352,270 + +0.1
352,493 + Atu3321 0.18 -0.2
352,527 - Atu3321 0.20 -0.4
352,535 + Atu3321 0.20 +0.9
352,543 - Atu3321 0.20 +0.1
352,587 - Atu3321 0.23 -0.4
352,619 - Atu3321 0.24 +1.5
352,636 - Atu3321 0.25 +0.5
352,714 - Atu3321 0.29 +0.4
352,739 - Atu3321 0.30 -0.3
352,815 + Atu3321 0.34 -0.4
352,815 + Atu3321 0.34 -0.3
352,939 - Atu3321 0.40 -0.3
352,951 + Atu3321 0.41 +1.6
352,951 + Atu3321 0.41 -1.2
352,953 + Atu3321 0.41 +0.0
352,959 - Atu3321 0.41 +0.6
352,959 - Atu3321 0.41 -1.5

Or see this region's nucleotide sequence