Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5518 and Atu5519 are separated by 86 nucleotides Atu5519 and Atu5520 are separated by 48 nucleotides
Atu5518: Atu5518 - hypothetical protein, at 509,639 to 511,147
Atu5518
Atu5519: Atu5519 - hypothetical protein, at 511,234 to 511,539
Atu5519
Atu5520: Atu5520 - acyl-CoA dehydrogenase, at 511,588 to 512,835
Atu5520
Position (kb) 511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 510.277 kb on - strand, within Atu5518 at 510.277 kb on - strand, within Atu5518 at 510.319 kb on + strand, within Atu5518 at 510.319 kb on + strand, within Atu5518 at 510.369 kb on + strand, within Atu5518 at 510.379 kb on - strand, within Atu5518 at 510.410 kb on - strand, within Atu5518 at 510.418 kb on + strand, within Atu5518 at 510.426 kb on - strand, within Atu5518 at 510.426 kb on - strand, within Atu5518 at 510.442 kb on - strand, within Atu5518 at 510.451 kb on + strand, within Atu5518 at 510.456 kb on + strand, within Atu5518 at 510.474 kb on - strand, within Atu5518 at 510.553 kb on + strand, within Atu5518 at 510.646 kb on - strand, within Atu5518 at 510.698 kb on + strand, within Atu5518 at 510.783 kb on + strand, within Atu5518 at 510.791 kb on - strand, within Atu5518 at 510.800 kb on + strand, within Atu5518 at 510.817 kb on - strand, within Atu5518 at 510.817 kb on - strand, within Atu5518 at 510.822 kb on - strand, within Atu5518 at 510.849 kb on + strand, within Atu5518 at 510.915 kb on + strand, within Atu5518 at 511.000 kb on - strand at 511.000 kb on - strand at 511.016 kb on - strand at 511.118 kb on + strand at 511.150 kb on + strand at 511.165 kb on - strand at 511.230 kb on + strand at 511.292 kb on + strand, within Atu5519 at 511.297 kb on + strand, within Atu5519 at 511.320 kb on - strand, within Atu5519 at 511.347 kb on + strand, within Atu5519 at 511.355 kb on - strand, within Atu5519 at 511.355 kb on - strand, within Atu5519 at 511.370 kb on - strand, within Atu5519 at 511.373 kb on - strand, within Atu5519 at 511.667 kb on - strand at 511.674 kb on + strand at 511.680 kb on + strand at 511.689 kb on - strand at 511.695 kb on - strand at 511.725 kb on + strand, within Atu5520 at 511.821 kb on - strand, within Atu5520 at 511.864 kb on - strand, within Atu5520 at 511.894 kb on - strand, within Atu5520 at 511.899 kb on - strand, within Atu5520 at 511.940 kb on + strand, within Atu5520 at 511.940 kb on + strand, within Atu5520 at 511.993 kb on - strand, within Atu5520 at 512.074 kb on - strand, within Atu5520 at 512.099 kb on + strand, within Atu5520 at 512.099 kb on + strand, within Atu5520 at 512.099 kb on + strand, within Atu5520 at 512.107 kb on - strand, within Atu5520 at 512.107 kb on - strand, within Atu5520 at 512.113 kb on - strand, within Atu5520 at 512.129 kb on + strand, within Atu5520 at 512.154 kb on + strand, within Atu5520 at 512.167 kb on + strand, within Atu5520 at 512.192 kb on - strand, within Atu5520 at 512.225 kb on - strand, within Atu5520 at 512.245 kb on - strand, within Atu5520 at 512.257 kb on + strand, within Atu5520 at 512.257 kb on + strand, within Atu5520 at 512.293 kb on + strand, within Atu5520 at 512.293 kb on + strand, within Atu5520 at 512.293 kb on + strand, within Atu5520 at 512.296 kb on - strand, within Atu5520 at 512.301 kb on - strand, within Atu5520
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 510,277 - Atu5518 0.42 +0.9 510,277 - Atu5518 0.42 -0.4 510,319 + Atu5518 0.45 +0.6 510,319 + Atu5518 0.45 -0.7 510,369 + Atu5518 0.48 -0.3 510,379 - Atu5518 0.49 -0.2 510,410 - Atu5518 0.51 -1.7 510,418 + Atu5518 0.52 +0.7 510,426 - Atu5518 0.52 +0.3 510,426 - Atu5518 0.52 -0.4 510,442 - Atu5518 0.53 -2.2 510,451 + Atu5518 0.54 -0.1 510,456 + Atu5518 0.54 +1.4 510,474 - Atu5518 0.55 -0.3 510,553 + Atu5518 0.61 +0.0 510,646 - Atu5518 0.67 +0.3 510,698 + Atu5518 0.70 -2.3 510,783 + Atu5518 0.76 -0.2 510,791 - Atu5518 0.76 -0.4 510,800 + Atu5518 0.77 +0.0 510,817 - Atu5518 0.78 -0.4 510,817 - Atu5518 0.78 -0.1 510,822 - Atu5518 0.78 +0.4 510,849 + Atu5518 0.80 +0.3 510,915 + Atu5518 0.85 -0.5 511,000 - +0.2 511,000 - +0.1 511,016 - -0.8 511,118 + +0.8 511,150 + +0.5 511,165 - +0.2 511,230 + +1.8 511,292 + Atu5519 0.19 -0.8 511,297 + Atu5519 0.21 +1.9 511,320 - Atu5519 0.28 -1.3 511,347 + Atu5519 0.37 +0.3 511,355 - Atu5519 0.40 -0.3 511,355 - Atu5519 0.40 +1.4 511,370 - Atu5519 0.44 +1.2 511,373 - Atu5519 0.45 +0.2 511,667 - -0.9 511,674 + +0.5 511,680 + -0.0 511,689 - +0.2 511,695 - -0.1 511,725 + Atu5520 0.11 +0.5 511,821 - Atu5520 0.19 -1.3 511,864 - Atu5520 0.22 -1.2 511,894 - Atu5520 0.25 +1.7 511,899 - Atu5520 0.25 +0.3 511,940 + Atu5520 0.28 +0.4 511,940 + Atu5520 0.28 -0.5 511,993 - Atu5520 0.32 -0.5 512,074 - Atu5520 0.39 +0.3 512,099 + Atu5520 0.41 +0.3 512,099 + Atu5520 0.41 -0.3 512,099 + Atu5520 0.41 -0.8 512,107 - Atu5520 0.42 +0.1 512,107 - Atu5520 0.42 +0.0 512,113 - Atu5520 0.42 -1.5 512,129 + Atu5520 0.43 +1.2 512,154 + Atu5520 0.45 -0.6 512,167 + Atu5520 0.46 -0.7 512,192 - Atu5520 0.48 +0.9 512,225 - Atu5520 0.51 -0.5 512,245 - Atu5520 0.53 -0.1 512,257 + Atu5520 0.54 -0.3 512,257 + Atu5520 0.54 -0.1 512,293 + Atu5520 0.56 +0.1 512,293 + Atu5520 0.56 +0.9 512,293 + Atu5520 0.56 -0.3 512,296 - Atu5520 0.57 -0.1 512,301 - Atu5520 0.57 -2.3
Or see this region's nucleotide sequence