Strain Fitness in Agrobacterium fabrum C58 around Atu3795

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3793 and Atu3794 overlap by 32 nucleotidesAtu3794 and Atu3795 are separated by 209 nucleotidesAtu3795 and Atu3796 overlap by 4 nucleotides Atu3793: Atu3793 - aspartate ammonia-lyase, at 885,929 to 887,374 Atu3793 Atu3794: Atu3794 - FadR family transcriptional regulator, at 887,343 to 888,059 Atu3794 Atu3795: Atu3795 - AcrB/AcrD/AcrF family protein, at 888,269 to 891,340 Atu3795 Atu3796: Atu3796 - efflux protein, at 891,337 to 892,422 Atu3796 Position (kb) 888 889 890 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 887.277 kb on - strandat 887.397 kb on - strandat 887.472 kb on + strand, within Atu3794at 887.553 kb on + strand, within Atu3794at 887.562 kb on - strand, within Atu3794at 887.587 kb on + strand, within Atu3794at 887.648 kb on - strand, within Atu3794at 887.813 kb on + strand, within Atu3794at 887.849 kb on + strand, within Atu3794at 887.856 kb on + strand, within Atu3794at 887.856 kb on + strand, within Atu3794at 887.918 kb on + strand, within Atu3794at 887.993 kb on - strandat 888.032 kb on + strandat 888.068 kb on - strandat 888.104 kb on - strandat 888.188 kb on + strandat 888.188 kb on + strandat 888.191 kb on - strandat 888.249 kb on + strandat 888.250 kb on + strandat 888.257 kb on - strandat 888.338 kb on - strandat 888.381 kb on - strandat 888.447 kb on - strandat 888.510 kb on + strandat 888.531 kb on + strandat 888.539 kb on - strandat 888.567 kb on - strandat 888.653 kb on - strand, within Atu3795at 888.660 kb on - strand, within Atu3795at 888.662 kb on + strand, within Atu3795at 888.670 kb on - strand, within Atu3795at 888.684 kb on + strand, within Atu3795at 888.697 kb on - strand, within Atu3795at 888.805 kb on - strand, within Atu3795at 888.805 kb on - strand, within Atu3795at 888.831 kb on + strand, within Atu3795at 889.040 kb on + strand, within Atu3795at 889.067 kb on - strand, within Atu3795at 889.101 kb on + strand, within Atu3795at 889.123 kb on + strand, within Atu3795at 889.131 kb on + strand, within Atu3795at 889.151 kb on + strand, within Atu3795at 889.159 kb on - strand, within Atu3795at 889.159 kb on - strand, within Atu3795at 889.190 kb on - strand, within Atu3795at 889.230 kb on - strand, within Atu3795at 889.237 kb on + strand, within Atu3795at 889.399 kb on + strand, within Atu3795at 889.470 kb on - strand, within Atu3795at 889.499 kb on + strand, within Atu3795at 889.512 kb on - strand, within Atu3795at 889.519 kb on + strand, within Atu3795at 889.526 kb on + strand, within Atu3795at 889.614 kb on - strand, within Atu3795at 889.703 kb on - strand, within Atu3795at 889.782 kb on - strand, within Atu3795at 889.887 kb on + strand, within Atu3795at 889.892 kb on + strand, within Atu3795at 889.900 kb on - strand, within Atu3795at 889.976 kb on + strand, within Atu3795at 889.987 kb on - strand, within Atu3795at 890.007 kb on + strand, within Atu3795at 890.015 kb on - strand, within Atu3795at 890.088 kb on + strand, within Atu3795at 890.088 kb on + strand, within Atu3795at 890.096 kb on - strand, within Atu3795at 890.151 kb on + strand, within Atu3795at 890.264 kb on + strand, within Atu3795at 890.269 kb on + strand, within Atu3795at 890.269 kb on + strand, within Atu3795at 890.277 kb on - strand, within Atu3795at 890.277 kb on - strand, within Atu3795at 890.613 kb on - strand, within Atu3795at 890.667 kb on + strand, within Atu3795at 890.712 kb on + strand, within Atu3795at 890.776 kb on + strand, within Atu3795at 890.878 kb on + strand, within Atu3795at 890.900 kb on + strand, within Atu3795at 890.908 kb on - strand, within Atu3795at 890.908 kb on - strand, within Atu3795at 890.908 kb on - strand, within Atu3795at 890.921 kb on - strand, within Atu3795at 890.978 kb on + strand, within Atu3795at 890.981 kb on - strand, within Atu3795at 891.061 kb on + strandat 891.075 kb on + strandat 891.077 kb on - strandat 891.079 kb on + strandat 891.087 kb on - strandat 891.087 kb on - strandat 891.110 kb on - strandat 891.145 kb on + strandat 891.191 kb on + strandat 891.194 kb on - strandat 891.196 kb on + strandat 891.199 kb on - strandat 891.274 kb on - strandat 891.292 kb on - strandat 891.359 kb on + strandat 891.378 kb on + strandat 891.378 kb on + strandat 891.378 kb on + strandat 891.385 kb on + strandat 891.446 kb on + strand, within Atu3796at 891.503 kb on - strand, within Atu3796at 891.629 kb on - strand, within Atu3796at 891.716 kb on - strand, within Atu3796at 891.758 kb on - strand, within Atu3796at 891.798 kb on + strand, within Atu3796at 891.807 kb on - strand, within Atu3796at 891.827 kb on - strand, within Atu3796at 891.901 kb on + strand, within Atu3796at 891.921 kb on + strand, within Atu3796at 891.928 kb on + strand, within Atu3796at 891.959 kb on + strand, within Atu3796at 892.002 kb on + strand, within Atu3796at 892.005 kb on - strand, within Atu3796at 892.055 kb on + strand, within Atu3796at 892.055 kb on + strand, within Atu3796at 892.063 kb on - strand, within Atu3796at 892.073 kb on - strand, within Atu3796at 892.073 kb on - strand, within Atu3796at 892.186 kb on - strand, within Atu3796at 892.255 kb on - strand, within Atu3796at 892.258 kb on + strand, within Atu3796at 892.300 kb on - strand, within Atu3796

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
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887,277 - +0.4
887,397 - -1.0
887,472 + Atu3794 0.18 +1.2
887,553 + Atu3794 0.29 +1.5
887,562 - Atu3794 0.31 +1.6
887,587 + Atu3794 0.34 +2.7
887,648 - Atu3794 0.43 -0.5
887,813 + Atu3794 0.66 +1.1
887,849 + Atu3794 0.71 +1.9
887,856 + Atu3794 0.72 +1.7
887,856 + Atu3794 0.72 +1.1
887,918 + Atu3794 0.80 +2.1
887,993 - -0.3
888,032 + -1.4
888,068 - -1.1
888,104 - +0.2
888,188 + -0.0
888,188 + -0.5
888,191 - +0.6
888,249 + -0.6
888,250 + -0.1
888,257 - -0.0
888,338 - +0.1
888,381 - +0.3
888,447 - -1.2
888,510 + -1.4
888,531 + -1.1
888,539 - -0.7
888,567 - +2.0
888,653 - Atu3795 0.12 +0.4
888,660 - Atu3795 0.13 -0.2
888,662 + Atu3795 0.13 +0.9
888,670 - Atu3795 0.13 +2.4
888,684 + Atu3795 0.14 +0.5
888,697 - Atu3795 0.14 +0.7
888,805 - Atu3795 0.17 -0.7
888,805 - Atu3795 0.17 -0.4
888,831 + Atu3795 0.18 -0.0
889,040 + Atu3795 0.25 -0.5
889,067 - Atu3795 0.26 +0.3
889,101 + Atu3795 0.27 -0.0
889,123 + Atu3795 0.28 +1.0
889,131 + Atu3795 0.28 +0.8
889,151 + Atu3795 0.29 +0.9
889,159 - Atu3795 0.29 +0.2
889,159 - Atu3795 0.29 +0.9
889,190 - Atu3795 0.30 -0.1
889,230 - Atu3795 0.31 -0.1
889,237 + Atu3795 0.32 +2.1
889,399 + Atu3795 0.37 +0.6
889,470 - Atu3795 0.39 +0.1
889,499 + Atu3795 0.40 +0.0
889,512 - Atu3795 0.40 +0.7
889,519 + Atu3795 0.41 +0.9
889,526 + Atu3795 0.41 -0.0
889,614 - Atu3795 0.44 -0.5
889,703 - Atu3795 0.47 +0.1
889,782 - Atu3795 0.49 -0.6
889,887 + Atu3795 0.53 -0.7
889,892 + Atu3795 0.53 -1.4
889,900 - Atu3795 0.53 -0.6
889,976 + Atu3795 0.56 -1.5
889,987 - Atu3795 0.56 -0.1
890,007 + Atu3795 0.57 +0.3
890,015 - Atu3795 0.57 -2.3
890,088 + Atu3795 0.59 +0.5
890,088 + Atu3795 0.59 +0.2
890,096 - Atu3795 0.59 -0.7
890,151 + Atu3795 0.61 +0.2
890,264 + Atu3795 0.65 -1.1
890,269 + Atu3795 0.65 -1.0
890,269 + Atu3795 0.65 +0.1
890,277 - Atu3795 0.65 -0.9
890,277 - Atu3795 0.65 +0.1
890,613 - Atu3795 0.76 -0.0
890,667 + Atu3795 0.78 -0.7
890,712 + Atu3795 0.80 +0.3
890,776 + Atu3795 0.82 +1.0
890,878 + Atu3795 0.85 -0.3
890,900 + Atu3795 0.86 -0.9
890,908 - Atu3795 0.86 -1.5
890,908 - Atu3795 0.86 +0.4
890,908 - Atu3795 0.86 -2.0
890,921 - Atu3795 0.86 +0.0
890,978 + Atu3795 0.88 +1.2
890,981 - Atu3795 0.88 +0.3
891,061 + +0.9
891,075 + -3.4
891,077 - +0.5
891,079 + -1.3
891,087 - -0.9
891,087 - -0.5
891,110 - +1.3
891,145 + -0.0
891,191 + -0.3
891,194 - -0.4
891,196 + -0.4
891,199 - -0.2
891,274 - -0.0
891,292 - -0.0
891,359 + +0.6
891,378 + -0.0
891,378 + -0.3
891,378 + -0.8
891,385 + -0.3
891,446 + Atu3796 0.10 -0.7
891,503 - Atu3796 0.15 +0.4
891,629 - Atu3796 0.27 +0.8
891,716 - Atu3796 0.35 -1.6
891,758 - Atu3796 0.39 -2.5
891,798 + Atu3796 0.42 +0.2
891,807 - Atu3796 0.43 +1.6
891,827 - Atu3796 0.45 +0.7
891,901 + Atu3796 0.52 +0.2
891,921 + Atu3796 0.54 +0.1
891,928 + Atu3796 0.54 -0.7
891,959 + Atu3796 0.57 -0.5
892,002 + Atu3796 0.61 +0.1
892,005 - Atu3796 0.62 +1.9
892,055 + Atu3796 0.66 -0.9
892,055 + Atu3796 0.66 -0.1
892,063 - Atu3796 0.67 +0.3
892,073 - Atu3796 0.68 -0.3
892,073 - Atu3796 0.68 +0.7
892,186 - Atu3796 0.78 +1.9
892,255 - Atu3796 0.85 +0.4
892,258 + Atu3796 0.85 -0.2
892,300 - Atu3796 0.89 +0.6

Or see this region's nucleotide sequence