Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0506 and Atu0507 are separated by 9 nucleotides Atu0507 and Atu0508 overlap by 4 nucleotides Atu0508 and Atu0509 overlap by 4 nucleotides Atu0509 and Atu0510 overlap by 1 nucleotides
Atu0506: Atu0506 - hypothetical protein, at 496,545 to 497,132
Atu0506
Atu0507: Atu0507 - potassium efflux system protein, at 497,142 to 497,486
Atu0507
Atu0508: Atu0508 - PH Adaption potassium efflux system, at 497,483 to 497,764
Atu0508
Atu0509: Atu0509 - phaE protein, at 497,761 to 498,246
Atu0509
Atu0510: Atu0510 - pH adaption potassium efflux system protein, at 498,246 to 499,889
Atu0510
Position (kb) 497
498
499 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 496.799 kb on - strand, within Atu0506 at 496.809 kb on + strand, within Atu0506 at 496.890 kb on - strand, within Atu0506 at 496.989 kb on + strand, within Atu0506 at 496.994 kb on + strand, within Atu0506 at 497.062 kb on + strand, within Atu0506 at 497.063 kb on + strand, within Atu0506 at 497.087 kb on + strand at 497.109 kb on + strand at 497.131 kb on + strand at 497.192 kb on + strand, within Atu0507 at 497.210 kb on + strand, within Atu0507 at 497.210 kb on + strand, within Atu0507 at 497.307 kb on + strand, within Atu0507 at 497.336 kb on - strand, within Atu0507 at 497.398 kb on + strand, within Atu0507 at 497.419 kb on + strand, within Atu0507 at 497.429 kb on + strand, within Atu0507 at 497.521 kb on + strand, within Atu0508 at 497.521 kb on + strand, within Atu0508 at 497.596 kb on + strand, within Atu0508 at 497.604 kb on - strand, within Atu0508 at 497.629 kb on + strand, within Atu0508 at 497.836 kb on + strand, within Atu0509 at 498.252 kb on - strand at 498.495 kb on - strand, within Atu0510 at 498.553 kb on - strand, within Atu0510 at 498.580 kb on + strand, within Atu0510 at 498.745 kb on + strand, within Atu0510 at 498.804 kb on - strand, within Atu0510 at 498.815 kb on + strand, within Atu0510 at 498.839 kb on + strand, within Atu0510 at 498.847 kb on - strand, within Atu0510 at 498.847 kb on - strand, within Atu0510 at 498.853 kb on + strand, within Atu0510 at 498.853 kb on + strand, within Atu0510 at 499.122 kb on - strand, within Atu0510
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 496,799 - Atu0506 0.43 +0.7 496,809 + Atu0506 0.45 +0.2 496,890 - Atu0506 0.59 +1.2 496,989 + Atu0506 0.76 +0.3 496,994 + Atu0506 0.76 -0.0 497,062 + Atu0506 0.88 -0.6 497,063 + Atu0506 0.88 +0.1 497,087 + -0.6 497,109 + +0.1 497,131 + -2.4 497,192 + Atu0507 0.14 +0.2 497,210 + Atu0507 0.20 +0.2 497,210 + Atu0507 0.20 -0.3 497,307 + Atu0507 0.48 -3.8 497,336 - Atu0507 0.56 -0.8 497,398 + Atu0507 0.74 -0.5 497,419 + Atu0507 0.80 -1.8 497,429 + Atu0507 0.83 -0.8 497,521 + Atu0508 0.13 -1.3 497,521 + Atu0508 0.13 -0.3 497,596 + Atu0508 0.40 -1.7 497,604 - Atu0508 0.43 +0.7 497,629 + Atu0508 0.52 +0.7 497,836 + Atu0509 0.15 -0.7 498,252 - -0.0 498,495 - Atu0510 0.15 +0.1 498,553 - Atu0510 0.19 +0.1 498,580 + Atu0510 0.20 -1.4 498,745 + Atu0510 0.30 -0.2 498,804 - Atu0510 0.34 +0.4 498,815 + Atu0510 0.35 -0.7 498,839 + Atu0510 0.36 -0.0 498,847 - Atu0510 0.37 +1.7 498,847 - Atu0510 0.37 -0.7 498,853 + Atu0510 0.37 -1.7 498,853 + Atu0510 0.37 -0.6 499,122 - Atu0510 0.53 -0.0
Or see this region's nucleotide sequence