Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5506 and Atu5507 are separated by 246 nucleotides Atu5507 and Atu5508 are separated by 55 nucleotides
Atu5506: Atu5506 - two component sensor kinase, at 496,956 to 498,314
Atu5506
Atu5507: Atu5507 - gamma-glutamyltranspeptidase, at 498,561 to 500,318
Atu5507
Atu5508: Atu5508 - glutathione S-transferase, at 500,374 to 501,072
Atu5508
Position (kb) 498
499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 497.578 kb on - strand, within Atu5506 at 497.622 kb on - strand, within Atu5506 at 497.684 kb on + strand, within Atu5506 at 497.700 kb on - strand, within Atu5506 at 497.781 kb on - strand, within Atu5506 at 497.860 kb on + strand, within Atu5506 at 497.865 kb on + strand, within Atu5506 at 497.996 kb on - strand, within Atu5506 at 498.007 kb on + strand, within Atu5506 at 498.081 kb on + strand, within Atu5506 at 498.094 kb on - strand, within Atu5506 at 498.107 kb on + strand, within Atu5506 at 498.150 kb on - strand, within Atu5506 at 498.157 kb on - strand, within Atu5506 at 498.184 kb on + strand at 498.288 kb on - strand at 498.288 kb on - strand at 498.424 kb on + strand at 498.432 kb on - strand at 498.432 kb on - strand at 498.447 kb on + strand at 498.558 kb on - strand at 498.633 kb on + strand at 498.772 kb on + strand, within Atu5507 at 498.792 kb on + strand, within Atu5507 at 498.826 kb on + strand, within Atu5507 at 498.826 kb on + strand, within Atu5507 at 498.855 kb on + strand, within Atu5507 at 498.863 kb on - strand, within Atu5507 at 498.925 kb on + strand, within Atu5507 at 498.994 kb on - strand, within Atu5507 at 499.004 kb on + strand, within Atu5507 at 499.041 kb on + strand, within Atu5507 at 499.068 kb on - strand, within Atu5507 at 499.110 kb on - strand, within Atu5507 at 499.127 kb on - strand, within Atu5507 at 499.206 kb on + strand, within Atu5507 at 499.214 kb on - strand, within Atu5507 at 499.217 kb on - strand, within Atu5507 at 499.316 kb on + strand, within Atu5507 at 499.324 kb on - strand, within Atu5507 at 499.324 kb on - strand, within Atu5507 at 499.324 kb on - strand, within Atu5507 at 499.324 kb on - strand, within Atu5507 at 499.324 kb on - strand, within Atu5507 at 499.345 kb on + strand, within Atu5507 at 499.403 kb on + strand, within Atu5507 at 499.411 kb on - strand, within Atu5507 at 499.431 kb on - strand, within Atu5507 at 499.552 kb on + strand, within Atu5507 at 499.571 kb on - strand, within Atu5507 at 499.637 kb on + strand, within Atu5507 at 499.660 kb on + strand, within Atu5507 at 499.699 kb on - strand, within Atu5507 at 499.730 kb on - strand, within Atu5507 at 499.813 kb on - strand, within Atu5507 at 499.911 kb on + strand, within Atu5507 at 499.976 kb on + strand, within Atu5507 at 500.085 kb on - strand, within Atu5507 at 500.129 kb on - strand, within Atu5507 at 500.255 kb on - strand at 500.283 kb on + strand at 500.322 kb on - strand at 500.352 kb on + strand at 500.389 kb on - strand at 500.459 kb on + strand, within Atu5508 at 500.684 kb on + strand, within Atu5508 at 500.693 kb on + strand, within Atu5508 at 500.701 kb on - strand, within Atu5508 at 500.728 kb on + strand, within Atu5508 at 500.737 kb on + strand, within Atu5508 at 500.827 kb on + strand, within Atu5508 at 500.844 kb on + strand, within Atu5508 at 500.950 kb on + strand, within Atu5508 at 500.950 kb on + strand, within Atu5508 at 500.952 kb on + strand, within Atu5508 at 500.952 kb on + strand, within Atu5508 at 500.958 kb on - strand, within Atu5508 at 500.958 kb on - strand, within Atu5508 at 500.960 kb on - strand, within Atu5508 at 500.960 kb on - strand, within Atu5508 at 500.960 kb on - strand, within Atu5508 at 500.960 kb on - strand, within Atu5508 at 500.960 kb on - strand, within Atu5508 at 500.994 kb on - strand, within Atu5508 at 501.010 kb on + strand at 501.010 kb on + strand at 501.020 kb on - strand at 501.077 kb on + strand at 501.102 kb on - strand at 501.139 kb on - strand at 501.147 kb on - strand at 501.167 kb on + strand at 501.168 kb on + strand at 501.168 kb on + strand at 501.183 kb on + strand at 501.183 kb on + strand at 501.201 kb on - strand at 501.268 kb on + strand at 501.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 497,578 - Atu5506 0.46 +1.3 497,622 - Atu5506 0.49 +0.1 497,684 + Atu5506 0.54 -0.5 497,700 - Atu5506 0.55 -0.1 497,781 - Atu5506 0.61 +0.5 497,860 + Atu5506 0.67 +1.6 497,865 + Atu5506 0.67 -0.1 497,996 - Atu5506 0.77 +0.8 498,007 + Atu5506 0.77 +0.5 498,081 + Atu5506 0.83 +0.6 498,094 - Atu5506 0.84 +0.6 498,107 + Atu5506 0.85 -0.0 498,150 - Atu5506 0.88 +0.2 498,157 - Atu5506 0.88 +0.1 498,184 + -0.9 498,288 - -0.1 498,288 - -0.5 498,424 + +0.2 498,432 - +0.3 498,432 - -1.2 498,447 + -0.3 498,558 - -1.7 498,633 + -0.2 498,772 + Atu5507 0.12 +2.0 498,792 + Atu5507 0.13 +0.3 498,826 + Atu5507 0.15 +2.6 498,826 + Atu5507 0.15 -0.2 498,855 + Atu5507 0.17 +0.7 498,863 - Atu5507 0.17 +0.9 498,925 + Atu5507 0.21 +0.6 498,994 - Atu5507 0.25 +0.3 499,004 + Atu5507 0.25 +0.0 499,041 + Atu5507 0.27 +0.1 499,068 - Atu5507 0.29 +1.9 499,110 - Atu5507 0.31 +0.5 499,127 - Atu5507 0.32 +0.4 499,206 + Atu5507 0.37 +0.2 499,214 - Atu5507 0.37 -2.7 499,217 - Atu5507 0.37 -0.5 499,316 + Atu5507 0.43 -2.2 499,324 - Atu5507 0.43 +0.1 499,324 - Atu5507 0.43 -2.9 499,324 - Atu5507 0.43 -1.5 499,324 - Atu5507 0.43 +0.9 499,324 - Atu5507 0.43 +1.1 499,345 + Atu5507 0.45 +0.1 499,403 + Atu5507 0.48 +0.4 499,411 - Atu5507 0.48 +1.1 499,431 - Atu5507 0.49 -0.2 499,552 + Atu5507 0.56 -1.2 499,571 - Atu5507 0.57 -0.9 499,637 + Atu5507 0.61 -0.4 499,660 + Atu5507 0.63 +0.4 499,699 - Atu5507 0.65 +1.6 499,730 - Atu5507 0.66 +0.4 499,813 - Atu5507 0.71 +0.9 499,911 + Atu5507 0.77 +1.9 499,976 + Atu5507 0.80 +0.4 500,085 - Atu5507 0.87 +0.8 500,129 - Atu5507 0.89 +0.4 500,255 - +0.3 500,283 + -0.5 500,322 - -0.3 500,352 + -0.1 500,389 - +0.1 500,459 + Atu5508 0.12 +0.5 500,684 + Atu5508 0.44 -0.9 500,693 + Atu5508 0.46 -0.0 500,701 - Atu5508 0.47 +0.2 500,728 + Atu5508 0.51 +0.0 500,737 + Atu5508 0.52 +1.2 500,827 + Atu5508 0.65 -0.5 500,844 + Atu5508 0.67 -2.3 500,950 + Atu5508 0.82 -0.7 500,950 + Atu5508 0.82 -0.5 500,952 + Atu5508 0.83 +0.2 500,952 + Atu5508 0.83 +0.5 500,958 - Atu5508 0.84 -0.7 500,958 - Atu5508 0.84 +0.1 500,960 - Atu5508 0.84 +0.6 500,960 - Atu5508 0.84 -1.4 500,960 - Atu5508 0.84 -0.1 500,960 - Atu5508 0.84 +0.6 500,960 - Atu5508 0.84 +1.0 500,994 - Atu5508 0.89 -0.8 501,010 + -0.4 501,010 + +0.1 501,020 - -0.3 501,077 + +0.1 501,102 - -0.1 501,139 - -0.2 501,147 - -1.0 501,167 + -3.3 501,168 + -0.6 501,168 + +0.4 501,183 + -1.8 501,183 + +0.6 501,201 - +1.1 501,268 + +0.1 501,268 + -0.9
Or see this region's nucleotide sequence