Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3682 and Atu3683 are separated by 11 nucleotides Atu3683 and Atu3684 are separated by 4 nucleotides
Atu3682: Atu3682 - non-ribosomal peptide synthetase, siderophore biosynthesis protein, at 742,507 to 749,706
Atu3682
Atu3683: Atu3683 - peptide synthetase, siderophore biosynthesis protein, at 749,718 to 757,409
Atu3683
Atu3684: Atu3684 - siderophore biosynthesis protein, at 757,414 to 759,081
Atu3684
Position (kb) 749
750
751
752
753
754
755
756
757
758 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 748.748 kb on + strand, within Atu3682 at 748.758 kb on + strand, within Atu3682 at 748.780 kb on + strand, within Atu3682 at 748.962 kb on + strand, within Atu3682 at 748.999 kb on - strand at 749.065 kb on - strand at 749.186 kb on - strand at 749.275 kb on + strand at 749.385 kb on - strand at 749.414 kb on + strand at 749.419 kb on + strand at 749.506 kb on + strand at 749.556 kb on - strand at 749.635 kb on + strand at 749.721 kb on - strand at 749.757 kb on + strand at 749.855 kb on + strand at 749.922 kb on + strand at 749.928 kb on - strand at 749.930 kb on - strand at 749.990 kb on - strand at 750.123 kb on + strand at 750.128 kb on + strand at 750.138 kb on + strand at 750.143 kb on + strand at 750.151 kb on - strand at 750.186 kb on - strand at 750.242 kb on - strand at 750.305 kb on + strand at 750.487 kb on - strand at 750.487 kb on - strand at 750.487 kb on - strand at 750.497 kb on - strand, within Atu3683 at 750.536 kb on + strand, within Atu3683 at 750.555 kb on - strand, within Atu3683 at 750.609 kb on + strand, within Atu3683 at 750.617 kb on - strand, within Atu3683 at 750.713 kb on - strand, within Atu3683 at 750.715 kb on - strand, within Atu3683 at 750.874 kb on + strand, within Atu3683 at 750.875 kb on + strand, within Atu3683 at 750.883 kb on - strand, within Atu3683 at 750.883 kb on - strand, within Atu3683 at 750.888 kb on - strand, within Atu3683 at 751.009 kb on - strand, within Atu3683 at 751.105 kb on - strand, within Atu3683 at 751.117 kb on - strand, within Atu3683 at 751.140 kb on + strand, within Atu3683 at 751.148 kb on - strand, within Atu3683 at 751.186 kb on + strand, within Atu3683 at 751.196 kb on - strand, within Atu3683 at 751.212 kb on + strand, within Atu3683 at 751.212 kb on + strand, within Atu3683 at 751.304 kb on + strand, within Atu3683 at 751.311 kb on + strand, within Atu3683 at 751.376 kb on + strand, within Atu3683 at 751.390 kb on + strand, within Atu3683 at 751.390 kb on + strand, within Atu3683 at 751.398 kb on - strand, within Atu3683 at 751.459 kb on - strand, within Atu3683 at 751.482 kb on + strand, within Atu3683 at 751.487 kb on + strand, within Atu3683 at 751.500 kb on - strand, within Atu3683 at 751.524 kb on + strand, within Atu3683 at 751.586 kb on + strand, within Atu3683 at 751.622 kb on + strand, within Atu3683 at 751.630 kb on - strand, within Atu3683 at 751.630 kb on - strand, within Atu3683 at 751.858 kb on + strand, within Atu3683 at 752.065 kb on + strand, within Atu3683 at 752.123 kb on + strand, within Atu3683 at 752.176 kb on - strand, within Atu3683 at 752.187 kb on + strand, within Atu3683 at 752.190 kb on - strand, within Atu3683 at 752.195 kb on - strand, within Atu3683 at 752.195 kb on - strand, within Atu3683 at 752.226 kb on - strand, within Atu3683 at 752.264 kb on - strand, within Atu3683 at 752.291 kb on - strand, within Atu3683 at 752.296 kb on - strand, within Atu3683 at 752.381 kb on - strand, within Atu3683 at 752.401 kb on + strand, within Atu3683 at 752.420 kb on + strand, within Atu3683 at 752.467 kb on + strand, within Atu3683 at 752.518 kb on + strand, within Atu3683 at 752.530 kb on + strand, within Atu3683 at 752.535 kb on + strand, within Atu3683 at 752.542 kb on + strand, within Atu3683 at 752.543 kb on - strand, within Atu3683 at 752.618 kb on + strand, within Atu3683 at 752.666 kb on + strand, within Atu3683 at 752.671 kb on + strand, within Atu3683 at 752.797 kb on - strand, within Atu3683 at 752.898 kb on + strand, within Atu3683 at 752.945 kb on + strand, within Atu3683 at 752.945 kb on + strand, within Atu3683 at 752.945 kb on + strand, within Atu3683 at 752.953 kb on - strand, within Atu3683 at 752.953 kb on - strand, within Atu3683 at 752.953 kb on - strand, within Atu3683 at 752.953 kb on - strand, within Atu3683 at 752.953 kb on - strand, within Atu3683 at 752.953 kb on - strand, within Atu3683 at 752.954 kb on + strand, within Atu3683 at 752.968 kb on - strand, within Atu3683 at 752.973 kb on - strand, within Atu3683 at 752.978 kb on + strand, within Atu3683 at 753.033 kb on + strand, within Atu3683 at 753.041 kb on - strand, within Atu3683 at 753.131 kb on + strand, within Atu3683 at 753.172 kb on + strand, within Atu3683 at 753.220 kb on + strand, within Atu3683 at 753.285 kb on + strand, within Atu3683 at 753.491 kb on + strand, within Atu3683 at 753.494 kb on - strand, within Atu3683 at 753.554 kb on - strand, within Atu3683 at 753.582 kb on + strand, within Atu3683 at 753.622 kb on + strand, within Atu3683 at 753.658 kb on - strand, within Atu3683 at 753.718 kb on - strand, within Atu3683 at 753.767 kb on + strand, within Atu3683 at 753.767 kb on + strand, within Atu3683 at 753.775 kb on - strand, within Atu3683 at 753.858 kb on + strand, within Atu3683 at 753.858 kb on + strand, within Atu3683 at 753.858 kb on + strand, within Atu3683 at 753.890 kb on - strand, within Atu3683 at 753.971 kb on + strand, within Atu3683 at 753.971 kb on + strand, within Atu3683 at 753.979 kb on - strand, within Atu3683 at 753.979 kb on - strand, within Atu3683 at 753.979 kb on - strand, within Atu3683 at 754.035 kb on + strand, within Atu3683 at 754.055 kb on + strand, within Atu3683 at 754.123 kb on - strand, within Atu3683 at 754.213 kb on + strand, within Atu3683 at 754.320 kb on + strand, within Atu3683 at 754.369 kb on - strand, within Atu3683 at 754.377 kb on + strand, within Atu3683 at 754.402 kb on - strand, within Atu3683 at 754.450 kb on - strand, within Atu3683 at 754.470 kb on - strand, within Atu3683 at 754.485 kb on + strand, within Atu3683 at 754.508 kb on - strand, within Atu3683 at 754.524 kb on + strand, within Atu3683 at 754.616 kb on + strand, within Atu3683 at 754.705 kb on + strand, within Atu3683 at 754.759 kb on + strand, within Atu3683 at 754.792 kb on + strand, within Atu3683 at 754.792 kb on - strand, within Atu3683 at 754.828 kb on + strand, within Atu3683 at 755.011 kb on - strand, within Atu3683 at 755.011 kb on - strand, within Atu3683 at 755.026 kb on + strand, within Atu3683 at 755.026 kb on + strand, within Atu3683 at 755.044 kb on - strand, within Atu3683 at 755.050 kb on - strand, within Atu3683 at 755.117 kb on + strand, within Atu3683 at 755.146 kb on + strand, within Atu3683 at 755.171 kb on + strand, within Atu3683 at 755.227 kb on - strand, within Atu3683 at 755.259 kb on - strand, within Atu3683 at 755.405 kb on + strand, within Atu3683 at 755.561 kb on - strand, within Atu3683 at 755.562 kb on - strand, within Atu3683 at 755.634 kb on + strand, within Atu3683 at 755.645 kb on - strand, within Atu3683 at 755.680 kb on - strand, within Atu3683 at 755.687 kb on + strand, within Atu3683 at 755.800 kb on + strand, within Atu3683 at 755.813 kb on - strand, within Atu3683 at 755.850 kb on + strand, within Atu3683 at 755.858 kb on - strand, within Atu3683 at 755.860 kb on + strand, within Atu3683 at 755.868 kb on - strand, within Atu3683 at 755.952 kb on + strand, within Atu3683 at 755.977 kb on + strand, within Atu3683 at 756.066 kb on + strand, within Atu3683 at 756.081 kb on + strand, within Atu3683 at 756.086 kb on + strand, within Atu3683 at 756.089 kb on - strand, within Atu3683 at 756.100 kb on + strand, within Atu3683 at 756.104 kb on + strand, within Atu3683 at 756.300 kb on - strand, within Atu3683 at 756.315 kb on - strand, within Atu3683 at 756.320 kb on - strand, within Atu3683 at 756.390 kb on + strand, within Atu3683 at 756.506 kb on + strand, within Atu3683 at 756.529 kb on - strand, within Atu3683 at 756.620 kb on + strand, within Atu3683 at 756.687 kb on - strand at 756.719 kb on + strand at 756.727 kb on - strand at 756.762 kb on + strand at 756.843 kb on + strand at 756.844 kb on + strand at 756.844 kb on + strand at 756.852 kb on - strand at 756.854 kb on - strand at 756.884 kb on + strand at 756.907 kb on - strand at 756.944 kb on - strand at 757.033 kb on - strand at 757.085 kb on + strand at 757.093 kb on - strand at 757.138 kb on - strand at 757.178 kb on + strand at 757.198 kb on - strand at 757.226 kb on + strand at 757.234 kb on - strand at 757.337 kb on + strand at 757.343 kb on - strand at 757.394 kb on + strand at 757.402 kb on + strand at 757.469 kb on - strand at 757.601 kb on + strand, within Atu3684 at 757.606 kb on + strand, within Atu3684 at 757.621 kb on + strand, within Atu3684 at 757.629 kb on - strand, within Atu3684 at 757.633 kb on + strand, within Atu3684 at 757.633 kb on + strand, within Atu3684 at 757.641 kb on - strand, within Atu3684 at 757.680 kb on - strand, within Atu3684 at 757.717 kb on + strand, within Atu3684 at 757.756 kb on + strand, within Atu3684 at 757.924 kb on + strand, within Atu3684 at 757.940 kb on + strand, within Atu3684 at 758.150 kb on + strand, within Atu3684 at 758.168 kb on - strand, within Atu3684 at 758.177 kb on - strand, within Atu3684 at 758.283 kb on + strand, within Atu3684 at 758.378 kb on + strand, within Atu3684
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 748,748 + Atu3682 0.87 -0.3 748,758 + Atu3682 0.87 -0.6 748,780 + Atu3682 0.87 -0.6 748,962 + Atu3682 0.90 -0.2 748,999 - +0.8 749,065 - +0.3 749,186 - +0.1 749,275 + +0.1 749,385 - -1.6 749,414 + +1.4 749,419 + -0.9 749,506 + +1.8 749,556 - +0.4 749,635 + -0.4 749,721 - -0.1 749,757 + +0.3 749,855 + -0.4 749,922 + +0.9 749,928 - -0.8 749,930 - +0.4 749,990 - +0.4 750,123 + -0.7 750,128 + +0.1 750,138 + +0.3 750,143 + -0.5 750,151 - -1.3 750,186 - -0.1 750,242 - +1.1 750,305 + -0.6 750,487 - -1.2 750,487 - +0.1 750,487 - +0.2 750,497 - Atu3683 0.10 -0.8 750,536 + Atu3683 0.11 -0.3 750,555 - Atu3683 0.11 -1.9 750,609 + Atu3683 0.12 +0.3 750,617 - Atu3683 0.12 +0.9 750,713 - Atu3683 0.13 +0.3 750,715 - Atu3683 0.13 -0.4 750,874 + Atu3683 0.15 -0.3 750,875 + Atu3683 0.15 -2.0 750,883 - Atu3683 0.15 -1.8 750,883 - Atu3683 0.15 -1.0 750,888 - Atu3683 0.15 -0.5 751,009 - Atu3683 0.17 -4.0 751,105 - Atu3683 0.18 -0.1 751,117 - Atu3683 0.18 -0.7 751,140 + Atu3683 0.18 -0.7 751,148 - Atu3683 0.19 +3.4 751,186 + Atu3683 0.19 +0.1 751,196 - Atu3683 0.19 -0.8 751,212 + Atu3683 0.19 -0.9 751,212 + Atu3683 0.19 -1.9 751,304 + Atu3683 0.21 -0.2 751,311 + Atu3683 0.21 -0.7 751,376 + Atu3683 0.22 +0.4 751,390 + Atu3683 0.22 +1.0 751,390 + Atu3683 0.22 -0.2 751,398 - Atu3683 0.22 +1.2 751,459 - Atu3683 0.23 -0.3 751,482 + Atu3683 0.23 -0.2 751,487 + Atu3683 0.23 -0.9 751,500 - Atu3683 0.23 -0.1 751,524 + Atu3683 0.23 -1.7 751,586 + Atu3683 0.24 +0.8 751,622 + Atu3683 0.25 -0.4 751,630 - Atu3683 0.25 +0.3 751,630 - Atu3683 0.25 -0.3 751,858 + Atu3683 0.28 -0.4 752,065 + Atu3683 0.31 +0.2 752,123 + Atu3683 0.31 +0.5 752,176 - Atu3683 0.32 +0.4 752,187 + Atu3683 0.32 +0.1 752,190 - Atu3683 0.32 +0.2 752,195 - Atu3683 0.32 +0.2 752,195 - Atu3683 0.32 -2.3 752,226 - Atu3683 0.33 +0.3 752,264 - Atu3683 0.33 -1.8 752,291 - Atu3683 0.33 +0.0 752,296 - Atu3683 0.34 +0.1 752,381 - Atu3683 0.35 -0.3 752,401 + Atu3683 0.35 -0.5 752,420 + Atu3683 0.35 -1.3 752,467 + Atu3683 0.36 +0.5 752,518 + Atu3683 0.36 -0.6 752,530 + Atu3683 0.37 -0.5 752,535 + Atu3683 0.37 +0.5 752,542 + Atu3683 0.37 -3.9 752,543 - Atu3683 0.37 -0.8 752,618 + Atu3683 0.38 -1.0 752,666 + Atu3683 0.38 -0.6 752,671 + Atu3683 0.38 +1.0 752,797 - Atu3683 0.40 +0.8 752,898 + Atu3683 0.41 -0.5 752,945 + Atu3683 0.42 -2.4 752,945 + Atu3683 0.42 +0.7 752,945 + Atu3683 0.42 -0.9 752,953 - Atu3683 0.42 -0.5 752,953 - Atu3683 0.42 +0.9 752,953 - Atu3683 0.42 +0.0 752,953 - Atu3683 0.42 -0.8 752,953 - Atu3683 0.42 -0.2 752,953 - Atu3683 0.42 +0.6 752,954 + Atu3683 0.42 +0.8 752,968 - Atu3683 0.42 -0.4 752,973 - Atu3683 0.42 +0.4 752,978 + Atu3683 0.42 -0.7 753,033 + Atu3683 0.43 -1.2 753,041 - Atu3683 0.43 +0.9 753,131 + Atu3683 0.44 -0.5 753,172 + Atu3683 0.45 +0.7 753,220 + Atu3683 0.46 +1.8 753,285 + Atu3683 0.46 -1.2 753,491 + Atu3683 0.49 -0.4 753,494 - Atu3683 0.49 -0.3 753,554 - Atu3683 0.50 -0.3 753,582 + Atu3683 0.50 -0.2 753,622 + Atu3683 0.51 +0.7 753,658 - Atu3683 0.51 -0.2 753,718 - Atu3683 0.52 -0.4 753,767 + Atu3683 0.53 +1.8 753,767 + Atu3683 0.53 -0.4 753,775 - Atu3683 0.53 -1.7 753,858 + Atu3683 0.54 +0.3 753,858 + Atu3683 0.54 +0.3 753,858 + Atu3683 0.54 +1.6 753,890 - Atu3683 0.54 +0.6 753,971 + Atu3683 0.55 +0.5 753,971 + Atu3683 0.55 -0.6 753,979 - Atu3683 0.55 +0.8 753,979 - Atu3683 0.55 -0.2 753,979 - Atu3683 0.55 -1.0 754,035 + Atu3683 0.56 -0.9 754,055 + Atu3683 0.56 -0.0 754,123 - Atu3683 0.57 -0.6 754,213 + Atu3683 0.58 +0.1 754,320 + Atu3683 0.60 +2.2 754,369 - Atu3683 0.60 +0.1 754,377 + Atu3683 0.61 -1.4 754,402 - Atu3683 0.61 -1.1 754,450 - Atu3683 0.62 +0.3 754,470 - Atu3683 0.62 +0.4 754,485 + Atu3683 0.62 -1.2 754,508 - Atu3683 0.62 +0.1 754,524 + Atu3683 0.62 -1.8 754,616 + Atu3683 0.64 -0.1 754,705 + Atu3683 0.65 +1.4 754,759 + Atu3683 0.66 -0.6 754,792 + Atu3683 0.66 +0.3 754,792 - Atu3683 0.66 -0.5 754,828 + Atu3683 0.66 +0.1 755,011 - Atu3683 0.69 +0.2 755,011 - Atu3683 0.69 -1.1 755,026 + Atu3683 0.69 -0.3 755,026 + Atu3683 0.69 +0.7 755,044 - Atu3683 0.69 -0.2 755,050 - Atu3683 0.69 -0.4 755,117 + Atu3683 0.70 -1.1 755,146 + Atu3683 0.71 -0.3 755,171 + Atu3683 0.71 +0.2 755,227 - Atu3683 0.72 +3.1 755,259 - Atu3683 0.72 -0.7 755,405 + Atu3683 0.74 +0.2 755,561 - Atu3683 0.76 -1.0 755,562 - Atu3683 0.76 -1.3 755,634 + Atu3683 0.77 +0.3 755,645 - Atu3683 0.77 +1.8 755,680 - Atu3683 0.78 -0.2 755,687 + Atu3683 0.78 -0.7 755,800 + Atu3683 0.79 +0.2 755,813 - Atu3683 0.79 -0.1 755,850 + Atu3683 0.80 +0.4 755,858 - Atu3683 0.80 +1.0 755,860 + Atu3683 0.80 +1.8 755,868 - Atu3683 0.80 +0.5 755,952 + Atu3683 0.81 -1.8 755,977 + Atu3683 0.81 +0.4 756,066 + Atu3683 0.83 +0.6 756,081 + Atu3683 0.83 +0.5 756,086 + Atu3683 0.83 -2.5 756,089 - Atu3683 0.83 +1.3 756,100 + Atu3683 0.83 +1.2 756,104 + Atu3683 0.83 -0.9 756,300 - Atu3683 0.86 +0.4 756,315 - Atu3683 0.86 +0.4 756,320 - Atu3683 0.86 -1.1 756,390 + Atu3683 0.87 +1.0 756,506 + Atu3683 0.88 -0.0 756,529 - Atu3683 0.89 +0.6 756,620 + Atu3683 0.90 +0.6 756,687 - -1.0 756,719 + -1.2 756,727 - +0.2 756,762 + -0.1 756,843 + +1.2 756,844 + -0.8 756,844 + -0.2 756,852 - +0.3 756,854 - +0.8 756,884 + -1.8 756,907 - +1.8 756,944 - -0.2 757,033 - +0.2 757,085 + -0.1 757,093 - -0.2 757,138 - +1.4 757,178 + +0.6 757,198 - -0.8 757,226 + -1.0 757,234 - +0.6 757,337 + +0.2 757,343 - -1.1 757,394 + -0.8 757,402 + -1.0 757,469 - +0.8 757,601 + Atu3684 0.11 -0.8 757,606 + Atu3684 0.12 -0.8 757,621 + Atu3684 0.12 +0.1 757,629 - Atu3684 0.13 -0.6 757,633 + Atu3684 0.13 -0.5 757,633 + Atu3684 0.13 +0.5 757,641 - Atu3684 0.14 -0.3 757,680 - Atu3684 0.16 +0.2 757,717 + Atu3684 0.18 -0.4 757,756 + Atu3684 0.21 +0.8 757,924 + Atu3684 0.31 -1.1 757,940 + Atu3684 0.32 -2.2 758,150 + Atu3684 0.44 +0.2 758,168 - Atu3684 0.45 -3.2 758,177 - Atu3684 0.46 +0.2 758,283 + Atu3684 0.52 -0.4 758,378 + Atu3684 0.58 +1.8
Or see this region's nucleotide sequence