Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3522 and Atu3523 are separated by 56 nucleotides Atu3523 and Atu8188 are separated by 8 nucleotides
Atu3522: Atu3522 - glucans biosynthesis protein, at 571,088 to 572,290
Atu3522
Atu3523: Atu3523 - polysaccharide biosynthesis-like protein, at 572,347 to 573,762
Atu3523
Atu8188: Atu8188 - hypothetical protein, at 573,771 to 575,042
Atu8188
Position (kb) 572
573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 571.698 kb on - strand, within Atu3522 at 572.157 kb on - strand, within Atu3522 at 572.282 kb on - strand at 572.306 kb on + strand at 572.348 kb on + strand at 572.353 kb on + strand at 572.361 kb on - strand at 572.373 kb on + strand at 572.381 kb on + strand at 572.483 kb on + strand at 572.486 kb on + strand at 572.587 kb on + strand, within Atu3523 at 572.635 kb on + strand, within Atu3523 at 572.643 kb on - strand, within Atu3523 at 572.720 kb on - strand, within Atu3523 at 572.789 kb on + strand, within Atu3523 at 572.832 kb on + strand, within Atu3523 at 572.926 kb on + strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 573.091 kb on + strand, within Atu3523 at 573.099 kb on - strand, within Atu3523 at 573.219 kb on - strand, within Atu3523 at 573.439 kb on - strand, within Atu3523 at 573.530 kb on - strand, within Atu3523 at 573.586 kb on + strand, within Atu3523 at 573.675 kb on - strand at 573.736 kb on + strand at 573.736 kb on + strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 574.189 kb on - strand, within Atu8188 at 574.314 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on - strand, within Atu8188 at 574.422 kb on - strand, within Atu8188 at 574.454 kb on - strand, within Atu8188 at 574.479 kb on + strand, within Atu8188 at 574.502 kb on + strand, within Atu8188 at 574.562 kb on - strand, within Atu8188 at 574.591 kb on - strand, within Atu8188 at 574.650 kb on + strand, within Atu8188
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 571,698 - Atu3522 0.51 +0.8 572,157 - Atu3522 0.89 +0.4 572,282 - -0.4 572,306 + +0.7 572,348 + +0.4 572,353 + -1.0 572,361 - -0.8 572,373 + +0.8 572,381 + +1.3 572,483 + -0.0 572,486 + +0.2 572,587 + Atu3523 0.17 +1.0 572,635 + Atu3523 0.20 +0.6 572,643 - Atu3523 0.21 +1.0 572,720 - Atu3523 0.26 +0.7 572,789 + Atu3523 0.31 +0.9 572,832 + Atu3523 0.34 +0.5 572,926 + Atu3523 0.41 +0.3 572,934 - Atu3523 0.41 -0.2 572,934 - Atu3523 0.41 +0.9 573,091 + Atu3523 0.53 +0.7 573,099 - Atu3523 0.53 -0.7 573,219 - Atu3523 0.62 -0.1 573,439 - Atu3523 0.77 +0.5 573,530 - Atu3523 0.84 -1.7 573,586 + Atu3523 0.88 +0.9 573,675 - +0.7 573,736 + -0.3 573,736 + -1.4 573,744 - -0.3 573,744 - +1.1 573,744 - -1.7 573,744 - -0.7 573,744 - -0.4 573,744 - -0.7 574,189 - Atu8188 0.33 -0.3 574,314 - Atu8188 0.43 +0.8 574,315 - Atu8188 0.43 -2.5 574,315 - Atu8188 0.43 -0.7 574,414 + Atu8188 0.51 -1.3 574,414 + Atu8188 0.51 +1.7 574,414 - Atu8188 0.51 +0.3 574,422 - Atu8188 0.51 -0.5 574,454 - Atu8188 0.54 -1.8 574,479 + Atu8188 0.56 +0.5 574,502 + Atu8188 0.57 +0.9 574,562 - Atu8188 0.62 +0.6 574,591 - Atu8188 0.64 -0.6 574,650 + Atu8188 0.69 +1.7
Or see this region's nucleotide sequence