Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3415 and Atu3416 are separated by 139 nucleotides Atu3416 and Atu3417 are separated by 25 nucleotides
Atu3415: Atu3415 - ABC transporter substrate binding protein, at 462,256 to 463,191
Atu3415
Atu3416: Atu3416 - ABC transporter substrate binding protein, at 463,331 to 464,269
Atu3416
Atu3417: Atu3417 - ABC transporter permease, at 464,295 to 466,106
Atu3417
Position (kb) 463
464
465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 462.360 kb on + strand, within Atu3415 at 462.376 kb on + strand, within Atu3415 at 462.393 kb on + strand, within Atu3415 at 462.401 kb on + strand, within Atu3415 at 462.401 kb on - strand, within Atu3415 at 462.401 kb on - strand, within Atu3415 at 462.455 kb on + strand, within Atu3415 at 462.552 kb on - strand, within Atu3415 at 462.570 kb on - strand, within Atu3415 at 462.673 kb on + strand, within Atu3415 at 462.681 kb on - strand, within Atu3415 at 462.865 kb on - strand, within Atu3415 at 462.896 kb on - strand, within Atu3415 at 463.217 kb on + strand at 463.269 kb on - strand at 463.271 kb on + strand at 463.308 kb on + strand at 463.372 kb on - strand at 463.372 kb on - strand at 463.378 kb on + strand at 463.378 kb on - strand at 463.438 kb on - strand, within Atu3416 at 463.444 kb on + strand, within Atu3416 at 463.465 kb on - strand, within Atu3416 at 463.553 kb on - strand, within Atu3416 at 463.691 kb on - strand, within Atu3416 at 463.725 kb on - strand, within Atu3416 at 463.783 kb on + strand, within Atu3416 at 463.796 kb on + strand, within Atu3416 at 463.894 kb on - strand, within Atu3416 at 463.940 kb on + strand, within Atu3416 at 463.949 kb on - strand, within Atu3416 at 464.078 kb on - strand, within Atu3416 at 464.181 kb on - strand at 464.341 kb on - strand at 464.351 kb on - strand at 464.351 kb on - strand at 464.390 kb on - strand at 464.476 kb on + strand at 464.485 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.515 kb on - strand, within Atu3417 at 464.515 kb on - strand, within Atu3417 at 464.515 kb on - strand, within Atu3417 at 464.589 kb on + strand, within Atu3417 at 464.624 kb on - strand, within Atu3417 at 464.846 kb on - strand, within Atu3417 at 464.911 kb on - strand, within Atu3417 at 464.935 kb on + strand, within Atu3417 at 464.984 kb on + strand, within Atu3417 at 464.992 kb on - strand, within Atu3417 at 464.992 kb on - strand, within Atu3417 at 464.992 kb on - strand, within Atu3417 at 465.149 kb on + strand, within Atu3417 at 465.190 kb on + strand, within Atu3417
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 462,360 + Atu3415 0.11 -0.8 462,376 + Atu3415 0.13 -1.2 462,393 + Atu3415 0.15 -1.3 462,401 + Atu3415 0.15 -0.7 462,401 - Atu3415 0.15 +2.1 462,401 - Atu3415 0.15 -1.3 462,455 + Atu3415 0.21 -0.2 462,552 - Atu3415 0.32 +0.4 462,570 - Atu3415 0.34 +0.5 462,673 + Atu3415 0.45 -0.9 462,681 - Atu3415 0.45 +0.3 462,865 - Atu3415 0.65 -0.3 462,896 - Atu3415 0.68 +0.1 463,217 + -1.3 463,269 - -0.9 463,271 + +0.0 463,308 + +0.0 463,372 - +0.9 463,372 - -0.7 463,378 + -1.0 463,378 - -1.0 463,438 - Atu3416 0.11 +0.9 463,444 + Atu3416 0.12 +0.0 463,465 - Atu3416 0.14 -1.8 463,553 - Atu3416 0.24 -2.0 463,691 - Atu3416 0.38 -0.6 463,725 - Atu3416 0.42 -0.1 463,783 + Atu3416 0.48 -0.1 463,796 + Atu3416 0.50 -1.0 463,894 - Atu3416 0.60 -0.3 463,940 + Atu3416 0.65 +0.0 463,949 - Atu3416 0.66 -0.1 464,078 - Atu3416 0.80 -0.6 464,181 - -1.1 464,341 - -1.5 464,351 - -0.6 464,351 - -2.7 464,390 - -1.1 464,476 + -0.0 464,485 + Atu3417 0.10 -0.9 464,507 + Atu3417 0.12 -0.6 464,507 + Atu3417 0.12 +0.6 464,507 + Atu3417 0.12 +1.2 464,507 + Atu3417 0.12 +0.1 464,515 - Atu3417 0.12 +0.2 464,515 - Atu3417 0.12 +0.3 464,515 - Atu3417 0.12 +0.5 464,589 + Atu3417 0.16 -2.3 464,624 - Atu3417 0.18 +0.6 464,846 - Atu3417 0.30 -1.4 464,911 - Atu3417 0.34 +0.0 464,935 + Atu3417 0.35 -3.1 464,984 + Atu3417 0.38 +0.7 464,992 - Atu3417 0.38 -1.2 464,992 - Atu3417 0.38 -1.2 464,992 - Atu3417 0.38 -0.7 465,149 + Atu3417 0.47 +1.1 465,190 + Atu3417 0.49 -0.2
Or see this region's nucleotide sequence