Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3374 and Atu3375 are separated by 127 nucleotides Atu3375 and Atu3376 overlap by 4 nucleotides Atu3376 and Atu3377 are separated by 7 nucleotides
Atu3374: Atu3374 - amidohydrolase, at 414,936 to 416,378
Atu3374
Atu3375: Atu3375 - peptide ABC transporter substrate-binding protein, at 416,506 to 418,083
Atu3375
Atu3376: Atu3376 - beta-lactamase, at 418,080 to 418,928
Atu3376
Atu3377: Atu3377 - peptide ABC transporter ATPase, at 418,936 to 420,570
Atu3377
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.512 kb on - strand, within Atu3374 at 415.559 kb on - strand, within Atu3374 at 415.572 kb on - strand, within Atu3374 at 415.728 kb on - strand, within Atu3374 at 415.738 kb on + strand, within Atu3374 at 415.776 kb on + strand, within Atu3374 at 415.834 kb on + strand, within Atu3374 at 415.846 kb on + strand, within Atu3374 at 415.848 kb on + strand, within Atu3374 at 415.856 kb on - strand, within Atu3374 at 415.856 kb on - strand, within Atu3374 at 415.877 kb on - strand, within Atu3374 at 415.959 kb on - strand, within Atu3374 at 415.974 kb on - strand, within Atu3374 at 415.976 kb on + strand, within Atu3374 at 415.977 kb on - strand, within Atu3374 at 415.984 kb on - strand, within Atu3374 at 415.985 kb on - strand, within Atu3374 at 416.066 kb on + strand, within Atu3374 at 416.108 kb on + strand, within Atu3374 at 416.160 kb on + strand, within Atu3374 at 416.299 kb on - strand at 416.321 kb on + strand at 416.378 kb on + strand at 416.381 kb on - strand at 416.381 kb on - strand at 416.392 kb on - strand at 416.392 kb on - strand at 416.396 kb on - strand at 416.401 kb on - strand at 416.408 kb on - strand at 416.408 kb on - strand at 416.533 kb on - strand at 416.561 kb on + strand at 416.696 kb on + strand, within Atu3375 at 416.704 kb on - strand, within Atu3375 at 416.704 kb on - strand, within Atu3375 at 416.704 kb on - strand, within Atu3375 at 416.715 kb on + strand, within Atu3375 at 416.734 kb on - strand, within Atu3375 at 416.751 kb on - strand, within Atu3375 at 416.776 kb on + strand, within Atu3375 at 416.784 kb on - strand, within Atu3375 at 416.784 kb on - strand, within Atu3375 at 416.809 kb on - strand, within Atu3375 at 416.858 kb on + strand, within Atu3375 at 416.911 kb on - strand, within Atu3375 at 416.911 kb on - strand, within Atu3375 at 416.935 kb on + strand, within Atu3375 at 417.054 kb on + strand, within Atu3375 at 417.062 kb on - strand, within Atu3375 at 417.073 kb on - strand, within Atu3375 at 417.178 kb on + strand, within Atu3375 at 417.335 kb on + strand, within Atu3375 at 417.392 kb on - strand, within Atu3375 at 417.401 kb on + strand, within Atu3375 at 417.500 kb on + strand, within Atu3375 at 417.622 kb on + strand, within Atu3375 at 417.656 kb on + strand, within Atu3375 at 417.671 kb on + strand, within Atu3375 at 417.671 kb on + strand, within Atu3375 at 417.679 kb on - strand, within Atu3375 at 417.750 kb on + strand, within Atu3375 at 417.750 kb on + strand, within Atu3375 at 417.763 kb on - strand, within Atu3375 at 417.817 kb on + strand, within Atu3375 at 417.882 kb on - strand, within Atu3375 at 417.897 kb on - strand, within Atu3375 at 417.901 kb on - strand, within Atu3375 at 417.950 kb on + strand at 417.958 kb on - strand at 417.960 kb on + strand at 418.052 kb on + strand at 418.052 kb on + strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.093 kb on - strand at 418.106 kb on - strand at 418.186 kb on + strand, within Atu3376 at 418.186 kb on + strand, within Atu3376 at 418.249 kb on - strand, within Atu3376 at 418.264 kb on - strand, within Atu3376 at 418.378 kb on + strand, within Atu3376 at 418.404 kb on - strand, within Atu3376 at 418.475 kb on - strand, within Atu3376 at 418.576 kb on - strand, within Atu3376 at 418.578 kb on + strand, within Atu3376 at 418.586 kb on - strand, within Atu3376 at 418.621 kb on - strand, within Atu3376 at 418.661 kb on + strand, within Atu3376 at 418.709 kb on + strand, within Atu3376 at 418.756 kb on + strand, within Atu3376 at 418.842 kb on + strand, within Atu3376 at 418.850 kb on - strand at 418.886 kb on - strand at 418.905 kb on - strand at 419.034 kb on + strand at 419.034 kb on + strand at 419.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days remove 415,512 - Atu3374 0.40 +0.0 415,559 - Atu3374 0.43 -0.9 415,572 - Atu3374 0.44 -0.4 415,728 - Atu3374 0.55 +0.3 415,738 + Atu3374 0.56 +1.0 415,776 + Atu3374 0.58 +0.5 415,834 + Atu3374 0.62 +0.5 415,846 + Atu3374 0.63 +1.5 415,848 + Atu3374 0.63 -0.4 415,856 - Atu3374 0.64 +0.2 415,856 - Atu3374 0.64 -0.5 415,877 - Atu3374 0.65 +0.5 415,959 - Atu3374 0.71 -0.3 415,974 - Atu3374 0.72 -0.0 415,976 + Atu3374 0.72 -0.1 415,977 - Atu3374 0.72 -0.1 415,984 - Atu3374 0.73 +0.1 415,985 - Atu3374 0.73 +0.5 416,066 + Atu3374 0.78 +0.2 416,108 + Atu3374 0.81 -0.7 416,160 + Atu3374 0.85 +0.2 416,299 - +0.2 416,321 + -0.3 416,378 + +0.7 416,381 - -0.6 416,381 - +2.1 416,392 - -0.4 416,392 - +0.2 416,396 - -0.1 416,401 - +0.2 416,408 - -0.4 416,408 - +0.5 416,533 - -0.5 416,561 + +0.1 416,696 + Atu3375 0.12 -0.2 416,704 - Atu3375 0.13 +0.1 416,704 - Atu3375 0.13 -2.2 416,704 - Atu3375 0.13 -1.3 416,715 + Atu3375 0.13 -0.6 416,734 - Atu3375 0.14 +0.3 416,751 - Atu3375 0.16 -2.5 416,776 + Atu3375 0.17 +0.1 416,784 - Atu3375 0.18 -1.1 416,784 - Atu3375 0.18 -0.1 416,809 - Atu3375 0.19 -0.7 416,858 + Atu3375 0.22 -0.2 416,911 - Atu3375 0.26 +0.4 416,911 - Atu3375 0.26 -0.1 416,935 + Atu3375 0.27 +0.2 417,054 + Atu3375 0.35 +0.5 417,062 - Atu3375 0.35 -0.7 417,073 - Atu3375 0.36 -0.5 417,178 + Atu3375 0.43 -1.5 417,335 + Atu3375 0.53 -0.1 417,392 - Atu3375 0.56 -0.5 417,401 + Atu3375 0.57 +0.1 417,500 + Atu3375 0.63 -0.8 417,622 + Atu3375 0.71 +0.1 417,656 + Atu3375 0.73 +1.1 417,671 + Atu3375 0.74 +1.5 417,671 + Atu3375 0.74 +0.4 417,679 - Atu3375 0.74 -0.4 417,750 + Atu3375 0.79 -1.4 417,750 + Atu3375 0.79 +0.9 417,763 - Atu3375 0.80 +0.1 417,817 + Atu3375 0.83 +0.5 417,882 - Atu3375 0.87 -0.5 417,897 - Atu3375 0.88 -0.4 417,901 - Atu3375 0.88 -0.0 417,950 + -0.1 417,958 - +1.5 417,960 + +1.1 418,052 + -0.2 418,052 + +0.2 418,060 - +0.5 418,060 - +0.0 418,060 - +0.4 418,060 - -1.0 418,085 + +0.5 418,085 + -0.6 418,085 + +0.3 418,085 + +0.3 418,085 + -0.8 418,085 + +0.1 418,093 - +0.3 418,106 - -0.5 418,186 + Atu3376 0.12 +0.2 418,186 + Atu3376 0.12 -0.2 418,249 - Atu3376 0.20 -0.6 418,264 - Atu3376 0.22 -0.2 418,378 + Atu3376 0.35 +0.1 418,404 - Atu3376 0.38 +0.2 418,475 - Atu3376 0.47 +0.8 418,576 - Atu3376 0.58 +0.3 418,578 + Atu3376 0.59 +0.3 418,586 - Atu3376 0.60 +0.5 418,621 - Atu3376 0.64 -1.1 418,661 + Atu3376 0.68 -0.3 418,709 + Atu3376 0.74 +0.1 418,756 + Atu3376 0.80 +1.5 418,842 + Atu3376 0.90 -1.8 418,850 - +2.1 418,886 - +0.4 418,905 - -0.0 419,034 + -0.8 419,034 + -1.9 419,042 - +0.8
Or see this region's nucleotide sequence