Strain Fitness in Agrobacterium fabrum C58 around Atu0864

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0862 and Atu0863 are separated by 7 nucleotidesAtu0863 and Atu0864 are separated by 103 nucleotidesAtu0864 and Atu0865 are separated by 72 nucleotides Atu0862: Atu0862 - hypothetical protein, at 860,240 to 860,635 Atu0862 Atu0863: Atu0863 - hypothetical protein, at 860,643 to 861,074 Atu0863 Atu0864: Atu0864 - oxidoreductase, at 861,178 to 861,936 Atu0864 Atu0865: Atu0865 - transcriptional regulator, AraC family, at 862,009 to 862,815 Atu0865 Position (kb) 861 862Strain fitness (log2 ratio) -2 -1 0 1 2at 860.283 kb on + strand, within Atu0862at 860.291 kb on - strand, within Atu0862at 860.291 kb on - strand, within Atu0862at 860.404 kb on + strand, within Atu0862at 860.404 kb on + strand, within Atu0862at 860.404 kb on + strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.539 kb on + strand, within Atu0862at 860.612 kb on - strandat 860.616 kb on + strandat 860.626 kb on + strandat 860.724 kb on + strand, within Atu0863at 860.732 kb on - strand, within Atu0863at 860.742 kb on - strand, within Atu0863at 860.759 kb on + strand, within Atu0863at 860.760 kb on + strand, within Atu0863at 860.762 kb on + strand, within Atu0863at 860.865 kb on + strand, within Atu0863at 860.982 kb on - strand, within Atu0863at 861.029 kb on - strand, within Atu0863at 861.048 kb on + strandat 861.050 kb on - strandat 861.081 kb on - strandat 861.228 kb on + strandat 861.228 kb on + strandat 861.231 kb on - strandat 861.343 kb on - strand, within Atu0864at 861.350 kb on - strand, within Atu0864at 861.393 kb on + strand, within Atu0864at 861.399 kb on + strand, within Atu0864at 861.401 kb on - strand, within Atu0864at 861.419 kb on - strand, within Atu0864at 861.477 kb on + strand, within Atu0864at 861.479 kb on - strand, within Atu0864at 861.616 kb on + strand, within Atu0864at 861.616 kb on + strand, within Atu0864at 861.738 kb on - strand, within Atu0864at 861.743 kb on - strand, within Atu0864at 861.762 kb on - strand, within Atu0864at 861.762 kb on - strand, within Atu0864at 861.773 kb on + strand, within Atu0864at 861.790 kb on + strand, within Atu0864at 861.930 kb on + strandat 861.930 kb on + strandat 861.930 kb on + strandat 861.930 kb on + strandat 861.938 kb on - strandat 861.938 kb on - strandat 861.938 kb on - strandat 862.052 kb on + strandat 862.178 kb on + strand, within Atu0865at 862.181 kb on - strand, within Atu0865at 862.196 kb on + strand, within Atu0865at 862.371 kb on + strand, within Atu0865at 862.422 kb on - strand, within Atu0865at 862.560 kb on - strand, within Atu0865at 862.565 kb on - strand, within Atu0865at 862.623 kb on + strand, within Atu0865at 862.649 kb on + strand, within Atu0865at 862.649 kb on + strand, within Atu0865at 862.862 kb on + strandat 862.872 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
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860,283 + Atu0862 0.11 -0.9
860,291 - Atu0862 0.13 +0.6
860,291 - Atu0862 0.13 +0.6
860,404 + Atu0862 0.41 +1.1
860,404 + Atu0862 0.41 +2.6
860,404 + Atu0862 0.41 +0.1
860,412 - Atu0862 0.43 +0.1
860,412 - Atu0862 0.43 -1.1
860,412 - Atu0862 0.43 +1.0
860,412 - Atu0862 0.43 +0.5
860,412 - Atu0862 0.43 +0.5
860,539 + Atu0862 0.76 -0.8
860,612 - +1.6
860,616 + -0.2
860,626 + -0.8
860,724 + Atu0863 0.19 -0.2
860,732 - Atu0863 0.21 +0.8
860,742 - Atu0863 0.23 -0.5
860,759 + Atu0863 0.27 -0.8
860,760 + Atu0863 0.27 +0.1
860,762 + Atu0863 0.28 +0.6
860,865 + Atu0863 0.51 +1.0
860,982 - Atu0863 0.78 -0.0
861,029 - Atu0863 0.89 -0.1
861,048 + -0.9
861,050 - -0.7
861,081 - -0.9
861,228 + +0.3
861,228 + +0.2
861,231 - +0.2
861,343 - Atu0864 0.22 -0.6
861,350 - Atu0864 0.23 +0.2
861,393 + Atu0864 0.28 -0.4
861,399 + Atu0864 0.29 -1.2
861,401 - Atu0864 0.29 -1.4
861,419 - Atu0864 0.32 -0.4
861,477 + Atu0864 0.39 -0.7
861,479 - Atu0864 0.40 -0.6
861,616 + Atu0864 0.58 -1.0
861,616 + Atu0864 0.58 -0.4
861,738 - Atu0864 0.74 +0.7
861,743 - Atu0864 0.74 +1.2
861,762 - Atu0864 0.77 -1.3
861,762 - Atu0864 0.77 +0.1
861,773 + Atu0864 0.78 -0.4
861,790 + Atu0864 0.81 -2.3
861,930 + +0.0
861,930 + -0.6
861,930 + +0.1
861,930 + +0.1
861,938 - +0.3
861,938 - -1.2
861,938 - +0.6
862,052 + +0.2
862,178 + Atu0865 0.21 +1.0
862,181 - Atu0865 0.21 +0.2
862,196 + Atu0865 0.23 +0.1
862,371 + Atu0865 0.45 -0.1
862,422 - Atu0865 0.51 -0.3
862,560 - Atu0865 0.68 -0.6
862,565 - Atu0865 0.69 -0.8
862,623 + Atu0865 0.76 -0.2
862,649 + Atu0865 0.79 +0.4
862,649 + Atu0865 0.79 +0.2
862,862 + +0.5
862,872 + +0.0

Or see this region's nucleotide sequence